Variant report

Variant	rs12247672
Chromosome Location	chr10:93163929-93163930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93158751..93160646-chr10:93163108..93165129,3	MCF-7	breast:
2	chr10:93161258..93164235-chr10:93184337..93187217,2	K562	blood:
3	chr10:93152974..93155260-chr10:93163531..93165879,2	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs11186558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186560	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186565	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186567	0.93[ASN][1000 genomes]
rs11186570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186573	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186574	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11186575	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs11186580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs11186584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs11186585	1.00[CEU][hapmap];0.89[ASN][1000 genomes]
rs11186586	0.89[ASN][1000 genomes]
rs11186595	0.89[ASN][1000 genomes]
rs11186596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.89[ASN][1000 genomes]
rs11186597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs11186607	0.84[ASN][1000 genomes]
rs12240706	0.98[ASN][1000 genomes]
rs12241174	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242238	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242257	0.93[ASN][1000 genomes]
rs12242663	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12242821	1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs12245101	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs12247442	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12249854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12250037	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12253137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12253556	0.87[ASN][1000 genomes]
rs12257663	0.89[ASN][1000 genomes]
rs12258185	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12258439	0.89[ASN][1000 genomes]
rs12259631	0.89[ASN][1000 genomes]
rs12259834	0.89[ASN][1000 genomes]
rs12261527	0.86[ASN][1000 genomes]
rs12262057	0.86[ASN][1000 genomes]
rs12263089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12265269	0.89[ASN][1000 genomes]
rs12266112	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12268013	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269643	0.93[ASN][1000 genomes]
rs1329652	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs13376715	0.89[ASN][1000 genomes]
rs13376868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1360187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs17106645	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106657	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2068866	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2421517	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs4376822	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs4415665	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4586060	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55718133	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55762845	0.89[ASN][1000 genomes]
rs56097320	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57033814	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57159565	0.89[ASN][1000 genomes]
rs57314370	0.86[ASN][1000 genomes]
rs57988119	0.89[ASN][1000 genomes]
rs57996677	1.00[ASN][1000 genomes]
rs59198703	0.89[ASN][1000 genomes]
rs59758370	0.89[ASN][1000 genomes]
rs60640820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61346715	0.82[ASN][1000 genomes]
rs61579794	0.89[ASN][1000 genomes]
rs6583769	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6583770	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583776	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs6583777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs7072087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs7074559	0.89[ASN][1000 genomes]
rs7075344	0.89[ASN][1000 genomes]
rs7075424	0.89[ASN][1000 genomes]
rs7076784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081363	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085276	0.89[ASN][1000 genomes]
rs7091647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7100516	0.86[ASN][1000 genomes]
rs73316210	1.00[ASN][1000 genomes]
rs73316216	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73316246	0.89[ASN][1000 genomes]
rs73316284	0.86[ASN][1000 genomes]
rs7342052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74150670	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7478184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs7893331	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893826	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894248	0.89[ASN][1000 genomes]
rs7895666	0.89[ASN][1000 genomes]
rs7898769	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7904917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905307	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906306	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906515	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7907154	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7908457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs7908769	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910115	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs7910864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7911332	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs7914133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs7914794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs7915331	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919797	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7920500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920553	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs7920604	0.88[CHD][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs9651433	0.87[ASN][1000 genomes]
rs9804186	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9804311	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9943307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93162400-93168800	Weak transcription	HSMM	muscle
2	chr10:93162600-93164200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:93162800-93169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93163000-93164200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93163000-93164400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:93163000-93164600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:93163000-93164600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:93163000-93166000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:93163000-93167600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:93163000-93168400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:93163000-93168800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:93163600-93168400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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