Variant report

Variant	rs4586060
Chromosome Location	chr10:93149220-93149221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93147638..93151565-chr10:93167677..93170597,5	MCF-7	breast:
2	chr10:93144864..93149225-chr10:93168067..93170332,4	MCF-7	breast:
3	chr10:93057932..93059780-chr10:93148474..93150830,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11186558	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186560	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186565	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186567	0.82[ASN][1000 genomes]
rs11186570	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11186573	0.84[EUR][1000 genomes]
rs11186574	0.88[JPT][hapmap]
rs11186575	0.88[JPT][hapmap]
rs11186580	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs11186584	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs11186585	1.00[CEU][hapmap]
rs11186596	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs11186597	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs12240706	0.86[ASN][1000 genomes]
rs12241174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12242238	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12242257	0.82[ASN][1000 genomes]
rs12242821	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs12245101	0.88[JPT][hapmap]
rs12247442	0.84[EUR][1000 genomes]
rs12247672	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12249854	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12250037	0.82[ASN][1000 genomes]
rs12253137	1.00[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12258185	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12263089	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12266112	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12268013	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12269643	0.82[ASN][1000 genomes]
rs1329652	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs13376868	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1360187	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs17106645	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17106657	0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2068866	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2421517	0.88[JPT][hapmap]
rs4376822	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4415665	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55718133	0.89[EUR][1000 genomes]
rs56097320	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57033814	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs60640820	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6583770	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583775	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs6583776	0.88[JPT][hapmap]
rs6583777	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7072087	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7076784	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7077014	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7077715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7081363	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7091647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73316210	0.89[ASN][1000 genomes]
rs73316216	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7342052	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74150670	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7478184	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7893331	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7893826	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898769	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7898845	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7904917	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7905307	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7906306	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7906515	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7907010	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7907154	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7908457	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7908769	0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7910115	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7910864	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7911332	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7914133	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7914794	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7915331	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7916523	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7919797	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7920500	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7920553	0.88[JPT][hapmap]
rs9804186	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9804311	0.84[EUR][1000 genomes]
rs9943307	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93142400-93149400	Weak transcription	Fetal Lung	lung
2	chr10:93142400-93149800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:93142600-93149600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:93149000-93149400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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