Variant report

Variant	rs11186575
Chromosome Location	chr10:93220104-93220105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11186558	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11186560	0.91[ASN][1000 genomes]
rs11186565	0.93[ASN][1000 genomes]
rs11186567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186570	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11186573	1.00[ASN][1000 genomes]
rs11186574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186580	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186584	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186586	1.00[ASN][1000 genomes]
rs11186595	1.00[ASN][1000 genomes]
rs11186596	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186597	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186604	0.87[ASN][1000 genomes]
rs11186605	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186606	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186607	0.95[ASN][1000 genomes]
rs12240706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12241174	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12242238	0.89[ASN][1000 genomes]
rs12242257	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12242663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12242821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12244155	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12245101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12247442	1.00[ASN][1000 genomes]
rs12247672	0.89[ASN][1000 genomes]
rs12249854	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12250037	0.95[ASN][1000 genomes]
rs12253137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12253556	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12257663	1.00[ASN][1000 genomes]
rs12258185	0.95[ASN][1000 genomes]
rs12258439	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259631	1.00[ASN][1000 genomes]
rs12259834	1.00[ASN][1000 genomes]
rs12261527	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12262057	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12263089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12265269	1.00[ASN][1000 genomes]
rs12266112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268013	0.91[ASN][1000 genomes]
rs12269643	0.95[ASN][1000 genomes]
rs1329652	0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13376715	1.00[ASN][1000 genomes]
rs13376868	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1360187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106645	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs17106657	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2068866	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2421517	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4376822	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4415665	0.95[ASN][1000 genomes]
rs4586060	0.88[JPT][hapmap]
rs55718133	0.91[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.95[ASN][1000 genomes]
rs57033814	0.89[ASN][1000 genomes]
rs57159565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57314370	0.98[ASN][1000 genomes]
rs57988119	1.00[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs59198703	1.00[ASN][1000 genomes]
rs59758370	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60640820	0.89[ASN][1000 genomes]
rs61346715	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61579794	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583769	0.93[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6583770	0.82[ASN][1000 genomes]
rs6583775	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6583776	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6583777	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7072087	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7074559	1.00[ASN][1000 genomes]
rs7075344	1.00[ASN][1000 genomes]
rs7075424	1.00[ASN][1000 genomes]
rs7076784	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7077014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7077715	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7081363	0.81[ASN][1000 genomes]
rs7085276	1.00[ASN][1000 genomes]
rs7091647	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7100516	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73316210	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73316216	0.91[ASN][1000 genomes]
rs73316246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73316284	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318211	0.88[EUR][1000 genomes]
rs7342052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7478184	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7893331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7893826	0.89[ASN][1000 genomes]
rs7894248	1.00[ASN][1000 genomes]
rs7895666	1.00[ASN][1000 genomes]
rs7898769	0.91[ASN][1000 genomes]
rs7898845	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7904917	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7905307	0.89[ASN][1000 genomes]
rs7906306	0.95[ASN][1000 genomes]
rs7906515	0.89[ASN][1000 genomes]
rs7907010	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7907154	0.84[ASN][1000 genomes]
rs7908457	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7908769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7910115	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910864	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911332	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7914133	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7914794	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7915331	0.89[ASN][1000 genomes]
rs7916523	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7919797	0.95[ASN][1000 genomes]
rs7920500	0.89[ASN][1000 genomes]
rs7920553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7920604	0.82[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs9651433	0.81[ASN][1000 genomes]
rs9804186	0.95[ASN][1000 genomes]
rs9804311	0.91[ASN][1000 genomes]
rs9943307	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93196000-93220600	Weak transcription	Hela-S3	cervix
4	chr10:93213200-93221800	Weak transcription	HSMM	muscle
5	chr10:93213200-93224200	Weak transcription	Aorta	Aorta
6	chr10:93213400-93224000	Weak transcription	Psoas Muscle	Psoas
7	chr10:93213600-93222200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:93214200-93220800	Weak transcription	NHDF-Ad	bronchial
9	chr10:93214200-93222200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:93214200-93222400	Weak transcription	Dnd41	blood
11	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
12	chr10:93214400-93220200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:93214400-93220200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:93214400-93220200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:93215200-93221800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:93215200-93222000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:93216400-93221800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:93216800-93223400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:93216800-93224000	Weak transcription	Brain Anterior Caudate	brain
20	chr10:93217200-93224000	Weak transcription	K562	blood
21	chr10:93217400-93224000	Weak transcription	Fetal Brain Female	brain
22	chr10:93217800-93220200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:93218000-93224200	Weak transcription	Left Ventricle	heart
24	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:93218200-93220200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:93218200-93220400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:93218200-93224200	Weak transcription	Esophagus	oesophagus
28	chr10:93218400-93222200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:93218400-93223600	Weak transcription	Fetal Intestine Large	intestine
30	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:93218800-93223600	Weak transcription	Brain Germinal Matrix	brain
32	chr10:93218800-93224000	Weak transcription	NH-A	brain
33	chr10:93219000-93222400	Weak transcription	Fetal Brain Male	brain
34	chr10:93219200-93220600	Genic enhancers	Fetal Lung	lung
35	chr10:93219200-93222400	Weak transcription	Fetal Kidney	kidney
36	chr10:93219400-93220800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:93219400-93221400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:93219400-93221800	Weak transcription	Osteobl	bone
39	chr10:93219400-93222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:93219600-93223200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:93219600-93224200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
43	chr10:93219800-93222800	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:93219800-93224200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:93219800-93224200	Strong transcription	Adipose Nuclei	Adipose
46	chr10:93220000-93220800	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:93220000-93221800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:93220000-93222400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:93220000-93222600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:93220000-93223200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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