Variant report

Variant	rs12261527
Chromosome Location	chr10:93288659-93288660
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93286272..93289010-chr10:93295360..93297242,2	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs11186558	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11186560	0.88[ASN][1000 genomes]
rs11186565	0.91[ASN][1000 genomes]
rs11186567	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11186573	0.98[ASN][1000 genomes]
rs11186574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186575	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11186584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11186585	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11186586	0.98[ASN][1000 genomes]
rs11186595	0.98[ASN][1000 genomes]
rs11186596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11186597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11186604	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11186605	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186606	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186607	0.98[ASN][1000 genomes]
rs12240706	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12241174	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs12242238	0.86[ASN][1000 genomes]
rs12242257	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12242663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs12242821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12244155	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12245101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247442	0.98[ASN][1000 genomes]
rs12247672	0.86[ASN][1000 genomes]
rs12249854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12250037	0.93[ASN][1000 genomes]
rs12253137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12253556	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12257663	0.98[ASN][1000 genomes]
rs12258185	0.93[ASN][1000 genomes]
rs12258439	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12259631	0.98[ASN][1000 genomes]
rs12259834	0.98[ASN][1000 genomes]
rs12262057	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12265269	0.98[ASN][1000 genomes]
rs12266112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12268013	0.88[ASN][1000 genomes]
rs12269643	0.93[ASN][1000 genomes]
rs1329652	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13376715	0.98[ASN][1000 genomes]
rs13376868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1360187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17106645	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs17106657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2068866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2421517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4376822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4415665	0.93[ASN][1000 genomes]
rs4586060	0.88[JPT][hapmap]
rs55718133	0.89[ASN][1000 genomes]
rs55762845	0.81[ASN][1000 genomes]
rs56097320	0.93[ASN][1000 genomes]
rs57033814	0.86[ASN][1000 genomes]
rs57159565	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57314370	0.95[ASN][1000 genomes]
rs57988119	0.98[ASN][1000 genomes]
rs57996677	0.86[ASN][1000 genomes]
rs59198703	0.98[ASN][1000 genomes]
rs59758370	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60640820	0.86[ASN][1000 genomes]
rs61346715	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61579794	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583769	0.88[JPT][hapmap]
rs6583770	0.80[ASN][1000 genomes]
rs6583775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6583776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6583777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7072087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7074559	0.98[ASN][1000 genomes]
rs7075344	0.98[ASN][1000 genomes]
rs7075424	0.98[ASN][1000 genomes]
rs7076784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7077014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7077715	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7085276	0.98[ASN][1000 genomes]
rs7091647	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7100516	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73316210	0.86[ASN][1000 genomes]
rs73316216	0.88[ASN][1000 genomes]
rs73316246	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73316284	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318211	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7342052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7478184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7893331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7893826	0.86[ASN][1000 genomes]
rs7894248	0.98[ASN][1000 genomes]
rs7895666	0.98[ASN][1000 genomes]
rs7898769	0.88[ASN][1000 genomes]
rs7898845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7904917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7905307	0.86[ASN][1000 genomes]
rs7906306	0.93[ASN][1000 genomes]
rs7906515	0.86[ASN][1000 genomes]
rs7907010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7907154	0.82[ASN][1000 genomes]
rs7908457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7908769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7910115	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910864	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7911332	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7914133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7914794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7915331	0.86[ASN][1000 genomes]
rs7916523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7919797	0.93[ASN][1000 genomes]
rs7920500	0.86[ASN][1000 genomes]
rs7920553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7920604	0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs9804186	0.93[ASN][1000 genomes]
rs9804311	0.88[ASN][1000 genomes]
rs9943307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93272200-93296000	Weak transcription	HSMMtube	muscle
2	chr10:93278200-93296000	Weak transcription	HSMM	muscle
3	chr10:93278400-93298400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:93285400-93289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:93287400-93288800	Flanking Active TSS	Liver	Liver
6	chr10:93287600-93288800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:93288000-93290000	Enhancers	Pancreas	Pancrea
8	chr10:93288200-93289600	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:93288200-93289600	Weak transcription	Fetal Lung	lung
10	chr10:93288400-93290000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:93288600-93296000	Weak transcription	Right Atrium	heart

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