Variant report

Variant	rs12258439
Chromosome Location	chr10:93275350-93275351
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11186558	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11186560	0.91[ASN][1000 genomes]
rs11186565	0.93[ASN][1000 genomes]
rs11186567	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11186573	1.00[ASN][1000 genomes]
rs11186574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186580	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186586	1.00[ASN][1000 genomes]
rs11186595	1.00[ASN][1000 genomes]
rs11186596	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186604	0.87[ASN][1000 genomes]
rs11186605	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186606	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186607	0.95[ASN][1000 genomes]
rs12240706	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12241174	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12242238	0.89[ASN][1000 genomes]
rs12242257	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12242663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12242821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12244155	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12245101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12247442	1.00[ASN][1000 genomes]
rs12247672	0.89[ASN][1000 genomes]
rs12249854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12250037	0.95[ASN][1000 genomes]
rs12253137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12253556	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12257663	1.00[ASN][1000 genomes]
rs12258185	0.95[ASN][1000 genomes]
rs12259631	1.00[ASN][1000 genomes]
rs12259834	1.00[ASN][1000 genomes]
rs12261527	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12262057	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12263089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12265269	1.00[ASN][1000 genomes]
rs12266112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268013	0.91[ASN][1000 genomes]
rs12269643	0.95[ASN][1000 genomes]
rs1329652	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13376715	1.00[ASN][1000 genomes]
rs13376868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1360187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106645	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs17106657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2068866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2421517	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4376822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4415665	0.95[ASN][1000 genomes]
rs4586060	0.88[JPT][hapmap]
rs55718133	0.91[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.95[ASN][1000 genomes]
rs57033814	0.89[ASN][1000 genomes]
rs57159565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57314370	0.98[ASN][1000 genomes]
rs57988119	1.00[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs59198703	1.00[ASN][1000 genomes]
rs59758370	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60640820	0.89[ASN][1000 genomes]
rs61346715	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61579794	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583769	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6583770	0.82[ASN][1000 genomes]
rs6583775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6583776	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6583777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7072087	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7074559	1.00[ASN][1000 genomes]
rs7075344	1.00[ASN][1000 genomes]
rs7075424	1.00[ASN][1000 genomes]
rs7076784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7077014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7077715	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7081363	0.81[ASN][1000 genomes]
rs7085276	1.00[ASN][1000 genomes]
rs7091647	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7100516	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73316210	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73316216	0.91[ASN][1000 genomes]
rs73316246	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73316284	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318211	0.88[EUR][1000 genomes]
rs7342052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7478184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7893331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7893826	0.89[ASN][1000 genomes]
rs7894248	1.00[ASN][1000 genomes]
rs7895666	1.00[ASN][1000 genomes]
rs7898769	0.91[ASN][1000 genomes]
rs7898845	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7904917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7905307	0.89[ASN][1000 genomes]
rs7906306	0.95[ASN][1000 genomes]
rs7906515	0.89[ASN][1000 genomes]
rs7907010	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7907154	0.84[ASN][1000 genomes]
rs7908457	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7908769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7910115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910864	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7914133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7914794	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7915331	0.89[ASN][1000 genomes]
rs7916523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7919797	0.95[ASN][1000 genomes]
rs7920500	0.89[ASN][1000 genomes]
rs7920553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7920604	0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs9651433	0.81[ASN][1000 genomes]
rs9804186	0.95[ASN][1000 genomes]
rs9804311	0.91[ASN][1000 genomes]
rs9943307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93224200-93280000	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:93227800-93277400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:93227800-93280000	Weak transcription	Left Ventricle	heart
4	chr10:93228000-93279400	Weak transcription	Ovary	ovary
5	chr10:93236400-93279800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93236600-93275600	Weak transcription	Aorta	Aorta
7	chr10:93244600-93284000	Weak transcription	Esophagus	oesophagus
8	chr10:93248000-93279600	Weak transcription	Fetal Intestine Large	intestine
9	chr10:93248200-93279800	Weak transcription	Psoas Muscle	Psoas
10	chr10:93259000-93284400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:93259400-93277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:93259600-93277400	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:93262200-93281800	Weak transcription	Fetal Brain Male	brain
14	chr10:93263000-93277200	Weak transcription	Adipose Nuclei	Adipose
15	chr10:93263000-93277400	Weak transcription	Dnd41	blood
16	chr10:93263000-93280200	Weak transcription	Fetal Kidney	kidney
17	chr10:93263800-93288000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:93269200-93276200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:93269400-93279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:93270800-93277200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:93271600-93279400	Weak transcription	Pancreas	Pancrea
22	chr10:93271800-93277600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:93271800-93281600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:93272000-93277400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:93272200-93296000	Weak transcription	HSMMtube	muscle
26	chr10:93272400-93277200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:93272600-93276000	Weak transcription	HMEC	breast
28	chr10:93272600-93277000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:93272600-93277400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:93272600-93277600	Weak transcription	HSMM	muscle
31	chr10:93272600-93279400	Weak transcription	NH-A	brain
32	chr10:93272600-93279400	Weak transcription	Osteobl	bone
33	chr10:93272600-93280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:93273400-93275400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr10:93274000-93276800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:93274000-93277200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:93274200-93278200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:93274600-93276000	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:93274600-93278200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:93274800-93278000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:93275000-93275400	Enhancers	Fetal Stomach	stomach
42	chr10:93275000-93277200	Weak transcription	HUVEC	blood vessel
43	chr10:93275000-93277200	Weak transcription	NHDF-Ad	bronchial
44	chr10:93275200-93275400	Genic enhancers	Fetal Lung	lung
45	chr10:93275200-93275800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:93275200-93280000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:93275200-93280400	Weak transcription	NHLF	lung

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