Variant report

Variant	rs2421517
Chromosome Location	chr10:93221600-93221601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs11186558	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11186560	0.91[ASN][1000 genomes]
rs11186565	0.93[ASN][1000 genomes]
rs11186567	0.95[ASN][1000 genomes]
rs11186570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11186573	1.00[ASN][1000 genomes]
rs11186574	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186575	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186580	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186586	1.00[ASN][1000 genomes]
rs11186595	1.00[ASN][1000 genomes]
rs11186596	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186604	0.87[ASN][1000 genomes]
rs11186605	0.89[ASN][1000 genomes]
rs11186606	0.87[ASN][1000 genomes]
rs11186607	0.95[ASN][1000 genomes]
rs12240706	0.91[ASN][1000 genomes]
rs12241174	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12242238	0.89[ASN][1000 genomes]
rs12242257	0.95[ASN][1000 genomes]
rs12242663	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12244155	0.87[ASN][1000 genomes]
rs12245101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12247442	1.00[ASN][1000 genomes]
rs12247672	0.89[ASN][1000 genomes]
rs12249854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12250037	0.95[ASN][1000 genomes]
rs12253137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12253556	0.98[ASN][1000 genomes]
rs12257663	1.00[ASN][1000 genomes]
rs12258185	0.95[ASN][1000 genomes]
rs12258439	1.00[ASN][1000 genomes]
rs12259631	1.00[ASN][1000 genomes]
rs12259834	1.00[ASN][1000 genomes]
rs12261527	0.98[ASN][1000 genomes]
rs12262057	0.98[ASN][1000 genomes]
rs12263089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12265269	1.00[ASN][1000 genomes]
rs12266112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12268013	0.91[ASN][1000 genomes]
rs12269643	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1329652	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13376715	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1360187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106645	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs17106657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2068866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4376822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4415665	0.95[ASN][1000 genomes]
rs4586060	0.88[JPT][hapmap]
rs55718133	0.91[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.95[ASN][1000 genomes]
rs57033814	0.89[ASN][1000 genomes]
rs57159565	1.00[ASN][1000 genomes]
rs57314370	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57988119	1.00[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs59198703	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59758370	1.00[ASN][1000 genomes]
rs60640820	0.89[ASN][1000 genomes]
rs61579794	1.00[ASN][1000 genomes]
rs6583769	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6583770	0.82[ASN][1000 genomes]
rs6583775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6583776	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6583777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7072087	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7074559	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075344	1.00[ASN][1000 genomes]
rs7075424	1.00[ASN][1000 genomes]
rs7076784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7077014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7077715	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7081363	0.81[ASN][1000 genomes]
rs7085276	1.00[ASN][1000 genomes]
rs7091647	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7100516	0.98[ASN][1000 genomes]
rs73316210	0.89[ASN][1000 genomes]
rs73316216	0.91[ASN][1000 genomes]
rs73316246	1.00[ASN][1000 genomes]
rs73316284	0.98[ASN][1000 genomes]
rs7342052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7478184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7893331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7893826	0.89[ASN][1000 genomes]
rs7894248	1.00[ASN][1000 genomes]
rs7895666	1.00[ASN][1000 genomes]
rs7898769	0.91[ASN][1000 genomes]
rs7898845	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7904917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7905307	0.89[ASN][1000 genomes]
rs7906306	0.95[ASN][1000 genomes]
rs7906515	0.89[ASN][1000 genomes]
rs7907010	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7907154	0.84[ASN][1000 genomes]
rs7908457	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7908769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7910115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7910864	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911332	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7914133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7914794	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7915331	0.89[ASN][1000 genomes]
rs7916523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7919797	0.95[ASN][1000 genomes]
rs7920500	0.89[ASN][1000 genomes]
rs7920553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920604	0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs9651433	0.81[ASN][1000 genomes]
rs9804186	0.95[ASN][1000 genomes]
rs9804311	0.91[ASN][1000 genomes]
rs9943307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93213200-93221800	Weak transcription	HSMM	muscle
4	chr10:93213200-93224200	Weak transcription	Aorta	Aorta
5	chr10:93213400-93224000	Weak transcription	Psoas Muscle	Psoas
6	chr10:93213600-93222200	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:93214200-93222200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:93214200-93222400	Weak transcription	Dnd41	blood
9	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
10	chr10:93215200-93221800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:93215200-93222000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:93216400-93221800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:93216800-93223400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:93216800-93224000	Weak transcription	Brain Anterior Caudate	brain
15	chr10:93217200-93224000	Weak transcription	K562	blood
16	chr10:93217400-93224000	Weak transcription	Fetal Brain Female	brain
17	chr10:93218000-93224200	Weak transcription	Left Ventricle	heart
18	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:93218200-93224200	Weak transcription	Esophagus	oesophagus
20	chr10:93218400-93222200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:93218400-93223600	Weak transcription	Fetal Intestine Large	intestine
22	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:93218800-93223600	Weak transcription	Brain Germinal Matrix	brain
24	chr10:93218800-93224000	Weak transcription	NH-A	brain
25	chr10:93219000-93222400	Weak transcription	Fetal Brain Male	brain
26	chr10:93219200-93222400	Weak transcription	Fetal Kidney	kidney
27	chr10:93219400-93221800	Weak transcription	Osteobl	bone
28	chr10:93219400-93222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:93219600-93223200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:93219600-93224200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
32	chr10:93219800-93222800	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:93219800-93224200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:93219800-93224200	Strong transcription	Adipose Nuclei	Adipose
35	chr10:93220000-93221800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:93220000-93222400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:93220000-93222600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:93220000-93223200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:93220000-93224200	Weak transcription	Fetal Intestine Small	intestine
40	chr10:93220200-93224000	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:93220200-93224800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:93220200-93225000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:93220200-93225000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:93220200-93226200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr10:93220200-93226800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:93220400-93222200	Weak transcription	Liver	Liver
47	chr10:93220400-93223600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:93220400-93223800	Weak transcription	Ovary	ovary
49	chr10:93220400-93224200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:93220600-93221800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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