Variant report

Variant	rs7905307
Chromosome Location	chr10:93155754-93155755
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93153759..93158978-chr10:93165852..93170137,6	MCF-7	breast:
2	chr10:93153179..93157130-chr10:93167181..93171260,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs11186558	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186560	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186565	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186567	0.93[ASN][1000 genomes]
rs11186570	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186573	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186574	0.89[ASN][1000 genomes]
rs11186575	0.89[ASN][1000 genomes]
rs11186580	0.89[ASN][1000 genomes]
rs11186584	0.89[ASN][1000 genomes]
rs11186585	0.89[ASN][1000 genomes]
rs11186586	0.89[ASN][1000 genomes]
rs11186595	0.89[ASN][1000 genomes]
rs11186596	0.89[ASN][1000 genomes]
rs11186597	0.89[ASN][1000 genomes]
rs11186607	0.84[ASN][1000 genomes]
rs12240706	0.98[ASN][1000 genomes]
rs12241174	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242238	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242257	0.93[ASN][1000 genomes]
rs12242663	0.89[ASN][1000 genomes]
rs12242821	0.98[ASN][1000 genomes]
rs12245101	0.86[ASN][1000 genomes]
rs12247442	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12247672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249854	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12250037	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12253137	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12253556	0.87[ASN][1000 genomes]
rs12257663	0.89[ASN][1000 genomes]
rs12258185	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12258439	0.89[ASN][1000 genomes]
rs12259631	0.89[ASN][1000 genomes]
rs12259834	0.89[ASN][1000 genomes]
rs12261527	0.86[ASN][1000 genomes]
rs12262057	0.86[ASN][1000 genomes]
rs12263089	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12265269	0.89[ASN][1000 genomes]
rs12266112	0.89[ASN][1000 genomes]
rs12268013	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269643	0.93[ASN][1000 genomes]
rs1329652	0.89[ASN][1000 genomes]
rs13376715	0.89[ASN][1000 genomes]
rs13376868	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1360187	0.89[ASN][1000 genomes]
rs17106645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106657	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2068866	0.89[ASN][1000 genomes]
rs2421517	0.89[ASN][1000 genomes]
rs4376822	0.89[ASN][1000 genomes]
rs4415665	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4586060	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55718133	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55762845	0.89[ASN][1000 genomes]
rs56097320	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57033814	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57159565	0.89[ASN][1000 genomes]
rs57314370	0.86[ASN][1000 genomes]
rs57988119	0.89[ASN][1000 genomes]
rs57996677	1.00[ASN][1000 genomes]
rs59198703	0.89[ASN][1000 genomes]
rs59758370	0.89[ASN][1000 genomes]
rs60640820	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61346715	0.82[ASN][1000 genomes]
rs61579794	0.89[ASN][1000 genomes]
rs6583769	0.91[ASN][1000 genomes]
rs6583770	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583775	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583776	0.89[ASN][1000 genomes]
rs6583777	0.89[ASN][1000 genomes]
rs7072087	0.89[ASN][1000 genomes]
rs7074559	0.89[ASN][1000 genomes]
rs7075344	0.89[ASN][1000 genomes]
rs7075424	0.89[ASN][1000 genomes]
rs7076784	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077014	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077715	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081363	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085276	0.89[ASN][1000 genomes]
rs7091647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7100516	0.86[ASN][1000 genomes]
rs73316210	1.00[ASN][1000 genomes]
rs73316216	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73316246	0.89[ASN][1000 genomes]
rs73316284	0.86[ASN][1000 genomes]
rs7342052	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74150670	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7478184	0.89[ASN][1000 genomes]
rs7893331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893826	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894248	0.89[ASN][1000 genomes]
rs7895666	0.89[ASN][1000 genomes]
rs7898769	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898845	0.89[ASN][1000 genomes]
rs7904917	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906306	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906515	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907010	0.89[ASN][1000 genomes]
rs7907154	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7908457	0.89[ASN][1000 genomes]
rs7908769	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910115	0.93[ASN][1000 genomes]
rs7910864	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7911332	0.95[ASN][1000 genomes]
rs7914133	0.89[ASN][1000 genomes]
rs7914794	0.89[ASN][1000 genomes]
rs7915331	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916523	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919797	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7920500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920553	0.89[ASN][1000 genomes]
rs7920604	0.89[ASN][1000 genomes]
rs9651433	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9804186	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9804311	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9943307	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93150000-93156800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr10:93155400-93156200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:93155600-93156000	Enhancers	Psoas Muscle	Psoas

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