Variant report

Variant	rs61346715
Chromosome Location	chr10:93178437-93178438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93172008..93174146-chr10:93176470..93178792,3	K562	blood:
2	chr10:93169440..93173782-chr10:93175073..93182747,10	K562	blood:
3	chr10:93178318..93180355-chr10:93183824..93185998,3	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11186558	0.82[ASN][1000 genomes]
rs11186560	0.84[ASN][1000 genomes]
rs11186565	0.86[ASN][1000 genomes]
rs11186567	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186570	0.84[ASN][1000 genomes]
rs11186574	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11186575	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11186605	0.82[AMR][1000 genomes]
rs12240706	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12242238	0.82[ASN][1000 genomes]
rs12242257	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12242821	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12245101	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12247672	0.82[ASN][1000 genomes]
rs12249854	0.84[ASN][1000 genomes]
rs12250037	0.84[ASN][1000 genomes]
rs12253137	0.84[ASN][1000 genomes]
rs12253556	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12258185	0.84[ASN][1000 genomes]
rs12258439	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12261527	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12262057	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12263089	0.84[ASN][1000 genomes]
rs12266112	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12268013	0.84[ASN][1000 genomes]
rs12269643	0.84[ASN][1000 genomes]
rs13376868	0.84[ASN][1000 genomes]
rs17106645	0.82[ASN][1000 genomes]
rs17106657	0.84[ASN][1000 genomes]
rs4415665	0.84[ASN][1000 genomes]
rs56097320	0.84[ASN][1000 genomes]
rs57033814	0.82[ASN][1000 genomes]
rs57159565	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57996677	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59758370	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60640820	0.82[ASN][1000 genomes]
rs61579794	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7076784	0.84[ASN][1000 genomes]
rs7077014	0.84[ASN][1000 genomes]
rs7077715	0.82[ASN][1000 genomes]
rs7100516	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73316210	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73316216	0.84[ASN][1000 genomes]
rs73316246	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73316284	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73318211	0.82[AMR][1000 genomes]
rs7342052	0.84[ASN][1000 genomes]
rs7893331	0.82[ASN][1000 genomes]
rs7893826	0.82[ASN][1000 genomes]
rs7898769	0.84[ASN][1000 genomes]
rs7904917	0.84[ASN][1000 genomes]
rs7905307	0.82[ASN][1000 genomes]
rs7906306	0.84[ASN][1000 genomes]
rs7906515	0.82[ASN][1000 genomes]
rs7908769	0.84[ASN][1000 genomes]
rs7910115	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911332	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7915331	0.82[ASN][1000 genomes]
rs7916523	0.84[ASN][1000 genomes]
rs7919797	0.84[ASN][1000 genomes]
rs7920500	0.82[ASN][1000 genomes]
rs9804186	0.84[ASN][1000 genomes]
rs9943307	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895888	chr10:93176418-93206699	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895889	chr10:93176418-93207971	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171000-93195000	Weak transcription	Left Ventricle	heart
3	chr10:93171600-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:93171800-93180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:93172200-93195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:93172800-93180400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:93172800-93186200	Weak transcription	Ovary	ovary
9	chr10:93173200-93194800	Weak transcription	Brain Germinal Matrix	brain
10	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:93175000-93180400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:93175000-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:93175000-93180600	Weak transcription	NHLF	lung
14	chr10:93175000-93192600	Weak transcription	Fetal Kidney	kidney
15	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
16	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
17	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
18	chr10:93175600-93180600	Weak transcription	HMEC	breast
19	chr10:93175600-93182800	Weak transcription	HSMMtube	muscle
20	chr10:93175800-93180400	Weak transcription	NH-A	brain
21	chr10:93176000-93180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:93176200-93180400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:93176200-93180400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:93176200-93180600	Weak transcription	HSMM	muscle
25	chr10:93176400-93180400	Weak transcription	Osteobl	bone
26	chr10:93176400-93185800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:93176600-93180400	Weak transcription	A549	lung
28	chr10:93176600-93182800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:93176600-93204000	Weak transcription	Brain Anterior Caudate	brain
30	chr10:93176600-93205400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:93176800-93180200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:93176800-93180200	Weak transcription	Psoas Muscle	Psoas
34	chr10:93176800-93180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:93176800-93180400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:93176800-93180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:93176800-93180600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:93176800-93183000	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:93176800-93185600	Weak transcription	Fetal Lung	lung
40	chr10:93176800-93196800	Weak transcription	Brain Angular Gyrus	brain
41	chr10:93176800-93199800	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:93176800-93203600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr10:93177000-93180400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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