Variant report

Variant	rs11186565
Chromosome Location	chr10:93183458-93183459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93168217..93171175-chr10:93180784..93183602,4	MCF-7	breast:
2	chr10:93168791..93171692-chr10:93180790..93184478,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11186558	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186560	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186567	0.98[ASN][1000 genomes]
rs11186570	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186573	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186574	0.93[ASN][1000 genomes]
rs11186575	0.93[ASN][1000 genomes]
rs11186580	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11186584	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11186585	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11186586	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11186595	0.93[ASN][1000 genomes]
rs11186596	1.00[CEU][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11186597	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11186604	0.80[ASN][1000 genomes]
rs11186605	0.82[ASN][1000 genomes]
rs11186606	0.80[ASN][1000 genomes]
rs11186607	0.88[ASN][1000 genomes]
rs12240706	0.98[ASN][1000 genomes]
rs12241174	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12242238	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12242257	0.98[ASN][1000 genomes]
rs12242663	0.93[ASN][1000 genomes]
rs12242821	0.98[ASN][1000 genomes]
rs12244155	0.80[ASN][1000 genomes]
rs12245101	0.91[ASN][1000 genomes]
rs12247442	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12247672	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12247942	0.95[AFR][1000 genomes]
rs12249854	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12250037	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12253137	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12253556	0.91[ASN][1000 genomes]
rs12257663	0.93[ASN][1000 genomes]
rs12258185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12258439	0.93[ASN][1000 genomes]
rs12259631	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12259834	0.93[ASN][1000 genomes]
rs12261527	0.91[ASN][1000 genomes]
rs12262057	0.91[ASN][1000 genomes]
rs12263089	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12265269	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12266112	0.93[ASN][1000 genomes]
rs12268013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269643	0.98[ASN][1000 genomes]
rs1329652	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13376715	0.93[ASN][1000 genomes]
rs13376868	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1360187	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17106645	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106657	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2068866	1.00[CEU][hapmap];0.93[ASN][1000 genomes]
rs2421517	0.93[ASN][1000 genomes]
rs3904193	0.91[AFR][1000 genomes]
rs3904194	0.89[AFR][1000 genomes]
rs4376822	1.00[CEU][hapmap];0.93[ASN][1000 genomes]
rs4415665	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4586060	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55718133	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55762845	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56097320	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57033814	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57159565	0.93[ASN][1000 genomes]
rs57314370	0.91[ASN][1000 genomes]
rs57988119	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57996677	0.95[ASN][1000 genomes]
rs59198703	0.93[ASN][1000 genomes]
rs59758370	0.93[ASN][1000 genomes]
rs60640820	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61346715	0.86[ASN][1000 genomes]
rs61579794	0.93[ASN][1000 genomes]
rs6583769	0.87[ASN][1000 genomes]
rs6583770	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583775	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583776	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583777	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7072087	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7074559	0.93[ASN][1000 genomes]
rs7075344	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7075424	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7076784	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077014	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077715	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7081363	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7085276	0.93[ASN][1000 genomes]
rs7091647	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7100516	0.91[ASN][1000 genomes]
rs73316210	0.95[ASN][1000 genomes]
rs73316216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73316246	0.93[ASN][1000 genomes]
rs73316284	0.91[ASN][1000 genomes]
rs7342052	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74150670	0.82[ASN][1000 genomes]
rs7478184	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7893331	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7893826	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7894248	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7895666	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7898769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898845	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7904917	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905307	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906306	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906515	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7907010	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7907154	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7908457	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7908769	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910115	0.98[ASN][1000 genomes]
rs7910864	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7911332	0.91[ASN][1000 genomes]
rs7914133	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7914794	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7915331	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7916523	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7920500	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7920553	0.93[ASN][1000 genomes]
rs7920604	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9651433	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9804186	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9804311	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9943307	1.00[CEU][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895888	chr10:93176418-93206699	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895889	chr10:93176418-93207971	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171000-93195000	Weak transcription	Left Ventricle	heart
3	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:93172200-93195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:93172800-93186200	Weak transcription	Ovary	ovary
6	chr10:93173200-93194800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:93175000-93192600	Weak transcription	Fetal Kidney	kidney
9	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
10	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
11	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
12	chr10:93176400-93185800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:93176600-93204000	Weak transcription	Brain Anterior Caudate	brain
14	chr10:93176600-93205400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:93176800-93185600	Weak transcription	Fetal Lung	lung
17	chr10:93176800-93196800	Weak transcription	Brain Angular Gyrus	brain
18	chr10:93176800-93199800	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:93176800-93203600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:93180800-93183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:93180800-93183800	Weak transcription	Psoas Muscle	Psoas
22	chr10:93180800-93193000	Weak transcription	HUVEC	blood vessel
23	chr10:93180800-93194600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:93180800-93203200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:93181000-93191600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:93181000-93195000	Weak transcription	Hela-S3	cervix
27	chr10:93181200-93183600	Weak transcription	NHEK	skin
28	chr10:93181200-93183800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:93181200-93183800	Weak transcription	NH-A	brain
30	chr10:93181200-93183800	Weak transcription	NHDF-Ad	bronchial
31	chr10:93181200-93183800	Weak transcription	Osteobl	bone
32	chr10:93181200-93193600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:93181200-93195000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:93181200-93197000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:93182000-93184400	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr10:93182200-93207200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:93182600-93184200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:93182800-93184000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:93182800-93184000	Enhancers	HSMMtube	muscle
40	chr10:93182800-93184600	Enhancers	HSMM	muscle
41	chr10:93183000-93185000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:93183000-93186000	Weak transcription	Fetal Brain Female	brain
43	chr10:93183200-93183800	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:93183200-93184400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:93183200-93184400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr10:93183400-93183800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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