Variant report

Variant	rs12241174
Chromosome Location	chr10:93151535-93151536
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93151407..93155536-chr10:93168446..93171574,3	K562	blood:
2	chr10:93147638..93151565-chr10:93167677..93170597,5	MCF-7	breast:
3	chr10:93149987..93152148-chr10:93152604..93155572,2	K562	blood:
4	chr10:93151407..93154863-chr10:93168446..93171574,3	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs11186558	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186560	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186565	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186567	0.87[ASN][1000 genomes]
rs11186570	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186573	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11186574	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11186575	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11186580	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11186584	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11186585	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs11186586	0.82[ASN][1000 genomes]
rs11186595	0.82[ASN][1000 genomes]
rs11186596	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11186597	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12240706	0.91[ASN][1000 genomes]
rs12242238	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242257	0.87[ASN][1000 genomes]
rs12242663	0.82[ASN][1000 genomes]
rs12242821	0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs12245101	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs12247442	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12247672	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12249854	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12250037	0.87[ASN][1000 genomes]
rs12253137	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12253556	0.80[ASN][1000 genomes]
rs12257663	0.82[ASN][1000 genomes]
rs12258185	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12258439	0.82[ASN][1000 genomes]
rs12259631	0.82[ASN][1000 genomes]
rs12259834	0.82[ASN][1000 genomes]
rs12261527	0.80[ASN][1000 genomes]
rs12262057	0.80[ASN][1000 genomes]
rs12263089	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12265269	0.82[ASN][1000 genomes]
rs12266112	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12268013	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12269643	0.87[ASN][1000 genomes]
rs1329652	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs13376715	0.82[ASN][1000 genomes]
rs13376868	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1360187	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs17106645	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17106657	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2068866	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2421517	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4376822	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4415665	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4586060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55718133	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57033814	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57159565	0.82[ASN][1000 genomes]
rs57314370	0.80[ASN][1000 genomes]
rs57988119	0.82[ASN][1000 genomes]
rs57996677	0.93[ASN][1000 genomes]
rs59198703	0.82[ASN][1000 genomes]
rs59758370	0.82[ASN][1000 genomes]
rs60640820	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61579794	0.82[ASN][1000 genomes]
rs6583769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6583770	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583775	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6583776	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6583777	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7072087	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7074559	0.82[ASN][1000 genomes]
rs7075344	0.82[ASN][1000 genomes]
rs7075424	0.82[ASN][1000 genomes]
rs7076784	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7077014	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7077715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081363	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7085276	0.82[ASN][1000 genomes]
rs7091647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7100516	0.80[ASN][1000 genomes]
rs73316210	0.93[ASN][1000 genomes]
rs73316216	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73316246	0.82[ASN][1000 genomes]
rs73316284	0.80[ASN][1000 genomes]
rs7342052	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74150670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7478184	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7893331	1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7893826	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7894248	0.82[ASN][1000 genomes]
rs7895666	0.82[ASN][1000 genomes]
rs7898769	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7898845	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7904917	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7905307	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906306	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7906515	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7907010	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7907154	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7908457	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7908769	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7910115	0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7910864	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7911332	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7914133	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7914794	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7915331	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7916523	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919797	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7920500	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7920553	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7920604	0.82[ASN][1000 genomes]
rs9651433	0.81[ASN][1000 genomes]
rs9804186	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9804311	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9943307	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93150000-93151600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:93150000-93152600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:93150000-93156800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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