Variant report

Variant	rs57988119
Chromosome Location	chr10:93259265-93259266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93258281..93261172-chr10:93273170..93275062,2	K562	blood:
2	chr10:93258411..93259432-chr10:93311351..93312312,3	MCF-7	breast:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11186558	0.89[ASN][1000 genomes]
rs11186560	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11186565	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11186567	0.95[ASN][1000 genomes]
rs11186570	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11186573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186574	1.00[ASN][1000 genomes]
rs11186575	1.00[ASN][1000 genomes]
rs11186580	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186584	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186595	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186596	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186597	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186604	0.87[ASN][1000 genomes]
rs11186605	0.89[ASN][1000 genomes]
rs11186606	0.87[ASN][1000 genomes]
rs11186607	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12240706	0.91[ASN][1000 genomes]
rs12241174	0.82[ASN][1000 genomes]
rs12242238	0.89[ASN][1000 genomes]
rs12242257	0.95[ASN][1000 genomes]
rs12242663	1.00[ASN][1000 genomes]
rs12242821	0.91[ASN][1000 genomes]
rs12244155	0.87[ASN][1000 genomes]
rs12245101	0.98[ASN][1000 genomes]
rs12247442	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12247672	0.89[ASN][1000 genomes]
rs12247942	0.92[AFR][1000 genomes]
rs12249854	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12250037	0.95[ASN][1000 genomes]
rs12253137	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12253556	0.98[ASN][1000 genomes]
rs12257663	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12258185	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12258439	1.00[ASN][1000 genomes]
rs12259631	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259834	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261527	0.98[ASN][1000 genomes]
rs12262057	0.98[ASN][1000 genomes]
rs12263089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12265269	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266112	1.00[ASN][1000 genomes]
rs12268013	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12269643	0.95[ASN][1000 genomes]
rs1329652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376715	1.00[ASN][1000 genomes]
rs13376868	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1360187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106645	0.89[ASN][1000 genomes]
rs17106657	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2068866	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2421517	1.00[ASN][1000 genomes]
rs3904193	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3904194	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4376822	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4415665	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55718133	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57033814	0.89[ASN][1000 genomes]
rs57159565	1.00[ASN][1000 genomes]
rs57314370	0.98[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs59198703	1.00[ASN][1000 genomes]
rs59758370	1.00[ASN][1000 genomes]
rs60640820	0.89[ASN][1000 genomes]
rs61579794	1.00[ASN][1000 genomes]
rs6583769	0.81[ASN][1000 genomes]
rs6583770	0.82[ASN][1000 genomes]
rs6583775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583776	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583777	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074559	1.00[ASN][1000 genomes]
rs7075344	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076784	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7077014	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7077715	0.89[ASN][1000 genomes]
rs7081363	0.81[ASN][1000 genomes]
rs7085276	1.00[ASN][1000 genomes]
rs7091647	0.86[ASN][1000 genomes]
rs7100516	0.98[ASN][1000 genomes]
rs73316210	0.89[ASN][1000 genomes]
rs73316216	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73316246	1.00[ASN][1000 genomes]
rs73316284	0.98[ASN][1000 genomes]
rs7342052	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7478184	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893331	0.89[ASN][1000 genomes]
rs7893826	0.89[ASN][1000 genomes]
rs7894248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898769	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7898845	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904917	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7905307	0.89[ASN][1000 genomes]
rs7906306	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7906515	0.89[ASN][1000 genomes]
rs7907010	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907154	0.84[ASN][1000 genomes]
rs7908457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908769	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7910115	0.95[ASN][1000 genomes]
rs7910864	0.84[ASN][1000 genomes]
rs7911332	0.84[ASN][1000 genomes]
rs7914133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914794	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915331	0.89[ASN][1000 genomes]
rs7916523	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7919797	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7920500	0.89[ASN][1000 genomes]
rs7920553	1.00[ASN][1000 genomes]
rs7920604	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651433	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9804186	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9804311	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9943307	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
2	chr10:93220600-93271400	Weak transcription	HMEC	breast
3	chr10:93220800-93259400	Weak transcription	Primary T cells from cord blood	blood
4	chr10:93224200-93271200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:93224200-93280000	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:93227600-93261600	Weak transcription	Dnd41	blood
7	chr10:93227600-93261600	Weak transcription	Hela-S3	cervix
8	chr10:93227800-93277400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:93227800-93280000	Weak transcription	Left Ventricle	heart
10	chr10:93228000-93260800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:93228000-93263200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:93228000-93271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:93228000-93271400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:93228000-93279400	Weak transcription	Ovary	ovary
15	chr10:93231000-93263000	Weak transcription	Fetal Stomach	stomach
16	chr10:93236200-93271600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:93236400-93279800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:93236600-93264400	Weak transcription	Placenta	Placenta
19	chr10:93236600-93275600	Weak transcription	Aorta	Aorta
20	chr10:93238000-93272200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:93243200-93260400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:93243600-93262600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:93244000-93264600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:93244600-93284000	Weak transcription	Esophagus	oesophagus
25	chr10:93244800-93273800	Weak transcription	Brain Germinal Matrix	brain
26	chr10:93245600-93261600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:93247000-93261200	Weak transcription	Primary B cells from cord blood	blood
28	chr10:93248000-93259400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:93248000-93279600	Weak transcription	Fetal Intestine Large	intestine
30	chr10:93248200-93279800	Weak transcription	Psoas Muscle	Psoas
31	chr10:93253400-93262000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:93254600-93264200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:93255200-93271200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:93255600-93262200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:93255600-93271200	Weak transcription	Osteobl	bone
36	chr10:93256200-93265600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:93256200-93271200	Weak transcription	NHDF-Ad	bronchial
38	chr10:93256200-93271200	Weak transcription	NHLF	lung
39	chr10:93256400-93271400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:93256800-93267600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr10:93257000-93261600	Weak transcription	Fetal Brain Male	brain
42	chr10:93257000-93263400	Weak transcription	Lung	lung
43	chr10:93257200-93262200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:93257400-93263600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:93257400-93274000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:93257600-93263000	Strong transcription	HSMM	muscle
47	chr10:93257600-93263200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:93257800-93260600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr10:93257800-93263200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:93257800-93264600	Weak transcription	Brain Angular Gyrus	brain

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