Variant report

Variant	rs7075424
Chromosome Location	chr10:93228622-93228623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93222597..93225004-chr10:93227464..93229499,2	K562	blood:

Variant related genes	Relation type
ENSG00000271385	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11186558	0.89[ASN][1000 genomes]
rs11186560	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186565	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186567	0.95[ASN][1000 genomes]
rs11186570	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186574	1.00[ASN][1000 genomes]
rs11186575	1.00[ASN][1000 genomes]
rs11186580	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186585	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186595	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186596	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186604	0.87[ASN][1000 genomes]
rs11186605	0.89[ASN][1000 genomes]
rs11186606	0.87[ASN][1000 genomes]
rs11186607	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12240706	0.91[ASN][1000 genomes]
rs12241174	0.82[ASN][1000 genomes]
rs12242238	0.89[ASN][1000 genomes]
rs12242257	0.95[ASN][1000 genomes]
rs12242663	1.00[ASN][1000 genomes]
rs12242821	0.91[ASN][1000 genomes]
rs12244155	0.87[ASN][1000 genomes]
rs12245101	0.98[ASN][1000 genomes]
rs12247442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247672	0.89[ASN][1000 genomes]
rs12247942	0.93[AFR][1000 genomes]
rs12249854	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12250037	0.95[ASN][1000 genomes]
rs12253137	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12253556	0.98[ASN][1000 genomes]
rs12257663	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12258185	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12258439	1.00[ASN][1000 genomes]
rs12259631	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259834	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261527	0.98[ASN][1000 genomes]
rs12262057	0.98[ASN][1000 genomes]
rs12263089	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12265269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266112	1.00[ASN][1000 genomes]
rs12268013	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12269643	0.95[ASN][1000 genomes]
rs1329652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376715	1.00[ASN][1000 genomes]
rs13376868	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1360187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106645	0.89[ASN][1000 genomes]
rs17106657	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2068866	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2421517	1.00[ASN][1000 genomes]
rs3904193	0.93[AFR][1000 genomes]
rs3904194	0.91[AFR][1000 genomes]
rs4376822	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4415665	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55718133	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57033814	0.89[ASN][1000 genomes]
rs57159565	1.00[ASN][1000 genomes]
rs57314370	0.98[ASN][1000 genomes]
rs57988119	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs59198703	1.00[ASN][1000 genomes]
rs59758370	1.00[ASN][1000 genomes]
rs60640820	0.89[ASN][1000 genomes]
rs61579794	1.00[ASN][1000 genomes]
rs6583769	0.81[ASN][1000 genomes]
rs6583770	0.82[ASN][1000 genomes]
rs6583775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583776	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583777	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074559	1.00[ASN][1000 genomes]
rs7075344	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076784	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077014	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077715	0.89[ASN][1000 genomes]
rs7081363	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7085276	1.00[ASN][1000 genomes]
rs7091647	0.86[ASN][1000 genomes]
rs7100516	0.98[ASN][1000 genomes]
rs73316210	0.89[ASN][1000 genomes]
rs73316216	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73316246	1.00[ASN][1000 genomes]
rs73316284	0.98[ASN][1000 genomes]
rs7342052	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7478184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893331	0.89[ASN][1000 genomes]
rs7893826	0.89[ASN][1000 genomes]
rs7894248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898769	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7898845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904917	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7905307	0.89[ASN][1000 genomes]
rs7906306	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906515	0.89[ASN][1000 genomes]
rs7907010	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907154	0.84[ASN][1000 genomes]
rs7908457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908769	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910115	0.95[ASN][1000 genomes]
rs7910864	0.84[ASN][1000 genomes]
rs7911332	0.84[ASN][1000 genomes]
rs7914133	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915331	0.89[ASN][1000 genomes]
rs7916523	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919797	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7920500	0.89[ASN][1000 genomes]
rs7920553	1.00[ASN][1000 genomes]
rs7920604	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651433	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9804186	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804311	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9943307	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv948134	chr10:93224011-93239053	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
2	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
4	chr10:93220600-93271400	Weak transcription	HMEC	breast
5	chr10:93220800-93229200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:93220800-93248200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:93220800-93259400	Weak transcription	Primary T cells from cord blood	blood
8	chr10:93221000-93228800	Weak transcription	Primary B cells from cord blood	blood
9	chr10:93222400-93230400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:93222600-93254400	Weak transcription	NHDF-Ad	bronchial
11	chr10:93222800-93244600	Weak transcription	Osteobl	bone
12	chr10:93223200-93230400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:93224200-93271200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:93224200-93280000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:93225200-93231400	Weak transcription	Fetal Kidney	kidney
16	chr10:93225200-93247800	Weak transcription	Psoas Muscle	Psoas
17	chr10:93225400-93242200	Weak transcription	HSMM	muscle
18	chr10:93227000-93229600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr10:93227200-93229000	Strong transcription	Fetal Lung	lung
20	chr10:93227400-93259200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:93227600-93236800	Weak transcription	Right Ventricle	heart
22	chr10:93227600-93243400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:93227600-93243400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:93227600-93254400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:93227600-93259200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:93227600-93259200	Weak transcription	NH-A	brain
27	chr10:93227600-93261600	Weak transcription	Dnd41	blood
28	chr10:93227600-93261600	Weak transcription	Hela-S3	cervix
29	chr10:93227800-93229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:93227800-93229400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:93227800-93230600	Weak transcription	Pancreas	Pancrea
32	chr10:93227800-93232400	Weak transcription	Brain Anterior Caudate	brain
33	chr10:93227800-93236200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:93227800-93236400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:93227800-93243400	Weak transcription	Adipose Nuclei	Adipose
36	chr10:93227800-93243600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:93227800-93249200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:93227800-93253800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:93227800-93277400	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:93227800-93280000	Weak transcription	Left Ventricle	heart
41	chr10:93228000-93229600	Weak transcription	Brain Angular Gyrus	brain
42	chr10:93228000-93229600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:93228000-93236000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:93228000-93236200	Weak transcription	Aorta	Aorta
45	chr10:93228000-93236200	Weak transcription	Spleen	Spleen
46	chr10:93228000-93237400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr10:93228000-93237800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:93228000-93238000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:93228000-93238800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:93228000-93239000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links