Variant report

Variant	rs57996677
Chromosome Location	chr10:93159077-93159078
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93158751..93160646-chr10:93163108..93165129,3	MCF-7	breast:
2	chr10:93158520..93160600-chr10:93166963..93169198,3	K562	blood:
3	chr10:93156857..93160458-chr10:93167698..93171945,4	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs11186558	1.00[ASN][1000 genomes]
rs11186560	0.98[ASN][1000 genomes]
rs11186565	0.95[ASN][1000 genomes]
rs11186567	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186570	0.93[ASN][1000 genomes]
rs11186573	0.89[ASN][1000 genomes]
rs11186574	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186575	0.89[ASN][1000 genomes]
rs11186580	0.89[ASN][1000 genomes]
rs11186584	0.89[ASN][1000 genomes]
rs11186585	0.89[ASN][1000 genomes]
rs11186586	0.89[ASN][1000 genomes]
rs11186595	0.89[ASN][1000 genomes]
rs11186596	0.89[ASN][1000 genomes]
rs11186597	0.89[ASN][1000 genomes]
rs11186607	0.84[ASN][1000 genomes]
rs12240706	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12241174	0.93[ASN][1000 genomes]
rs12242238	1.00[ASN][1000 genomes]
rs12242257	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242663	0.89[ASN][1000 genomes]
rs12242821	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12245101	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12247442	0.89[ASN][1000 genomes]
rs12247672	1.00[ASN][1000 genomes]
rs12249854	0.93[ASN][1000 genomes]
rs12250037	0.93[ASN][1000 genomes]
rs12253137	0.98[ASN][1000 genomes]
rs12253556	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12257663	0.89[ASN][1000 genomes]
rs12258185	0.93[ASN][1000 genomes]
rs12258439	0.89[ASN][1000 genomes]
rs12259631	0.89[ASN][1000 genomes]
rs12259834	0.89[ASN][1000 genomes]
rs12261527	0.86[ASN][1000 genomes]
rs12262057	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12263089	0.93[ASN][1000 genomes]
rs12265269	0.89[ASN][1000 genomes]
rs12266112	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12268013	0.98[ASN][1000 genomes]
rs12269643	0.93[ASN][1000 genomes]
rs1329652	0.89[ASN][1000 genomes]
rs13376715	0.89[ASN][1000 genomes]
rs13376868	0.93[ASN][1000 genomes]
rs1360187	0.89[ASN][1000 genomes]
rs17106645	1.00[ASN][1000 genomes]
rs17106657	0.93[ASN][1000 genomes]
rs2068866	0.89[ASN][1000 genomes]
rs2421517	0.89[ASN][1000 genomes]
rs4376822	0.89[ASN][1000 genomes]
rs4415665	0.93[ASN][1000 genomes]
rs4586060	0.89[ASN][1000 genomes]
rs55718133	0.89[ASN][1000 genomes]
rs55762845	0.89[ASN][1000 genomes]
rs56097320	0.93[ASN][1000 genomes]
rs57033814	1.00[ASN][1000 genomes]
rs57159565	0.89[ASN][1000 genomes]
rs57314370	0.86[ASN][1000 genomes]
rs57988119	0.89[ASN][1000 genomes]
rs59198703	0.89[ASN][1000 genomes]
rs59758370	0.89[ASN][1000 genomes]
rs60640820	1.00[ASN][1000 genomes]
rs61346715	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61579794	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583769	0.91[ASN][1000 genomes]
rs6583770	0.93[ASN][1000 genomes]
rs6583775	0.89[ASN][1000 genomes]
rs6583776	0.89[ASN][1000 genomes]
rs6583777	0.89[ASN][1000 genomes]
rs7072087	0.89[ASN][1000 genomes]
rs7074559	0.89[ASN][1000 genomes]
rs7075344	0.89[ASN][1000 genomes]
rs7075424	0.89[ASN][1000 genomes]
rs7076784	0.93[ASN][1000 genomes]
rs7077014	0.93[ASN][1000 genomes]
rs7077715	1.00[ASN][1000 genomes]
rs7081363	0.91[ASN][1000 genomes]
rs7085276	0.89[ASN][1000 genomes]
rs7091647	0.98[ASN][1000 genomes]
rs7100516	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73316210	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73316216	0.98[ASN][1000 genomes]
rs73316246	0.89[ASN][1000 genomes]
rs73316284	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7342052	0.93[ASN][1000 genomes]
rs74150670	0.86[ASN][1000 genomes]
rs7478184	0.89[ASN][1000 genomes]
rs7893331	1.00[ASN][1000 genomes]
rs7893826	1.00[ASN][1000 genomes]
rs7894248	0.89[ASN][1000 genomes]
rs7895666	0.89[ASN][1000 genomes]
rs7898769	0.98[ASN][1000 genomes]
rs7898845	0.89[ASN][1000 genomes]
rs7904917	0.98[ASN][1000 genomes]
rs7905307	1.00[ASN][1000 genomes]
rs7906306	0.93[ASN][1000 genomes]
rs7906515	1.00[ASN][1000 genomes]
rs7907010	0.89[ASN][1000 genomes]
rs7907154	0.95[ASN][1000 genomes]
rs7908457	0.89[ASN][1000 genomes]
rs7908769	0.93[ASN][1000 genomes]
rs7910115	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910864	0.95[ASN][1000 genomes]
rs7911332	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914133	0.89[ASN][1000 genomes]
rs7914794	0.89[ASN][1000 genomes]
rs7915331	1.00[ASN][1000 genomes]
rs7916523	0.98[ASN][1000 genomes]
rs7919797	0.93[ASN][1000 genomes]
rs7920500	1.00[ASN][1000 genomes]
rs7920553	0.89[ASN][1000 genomes]
rs7920604	0.89[ASN][1000 genomes]
rs9651433	0.87[ASN][1000 genomes]
rs9804186	0.93[ASN][1000 genomes]
rs9804311	0.89[ASN][1000 genomes]
rs9943307	0.93[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links