Variant report

Variant	rs73316216
Chromosome Location	chr10:93175953-93175954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93172033..93173602-chr10:93174597..93176611,2	MCF-7	breast:
2	chr10:93175184..93178091-chr10:93179024..93182770,3	K562	blood:
3	chr10:93174410..93176355-chr10:93191007..93193487,2	MCF-7	breast:
4	chr10:93174571..93177755-chr10:93180485..93182770,3	K562	blood:
5	chr10:93169440..93173782-chr10:93175073..93182747,10	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11186558	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186560	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186567	0.95[ASN][1000 genomes]
rs11186570	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186573	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186574	0.91[ASN][1000 genomes]
rs11186575	0.91[ASN][1000 genomes]
rs11186580	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11186584	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11186585	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11186586	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11186595	0.91[ASN][1000 genomes]
rs11186596	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11186597	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11186605	0.80[ASN][1000 genomes]
rs11186607	0.86[ASN][1000 genomes]
rs12240706	1.00[ASN][1000 genomes]
rs12241174	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12242238	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12242257	0.95[ASN][1000 genomes]
rs12242663	0.91[ASN][1000 genomes]
rs12242821	1.00[ASN][1000 genomes]
rs12245101	0.88[ASN][1000 genomes]
rs12247442	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12247672	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12247942	0.95[AFR][1000 genomes]
rs12249854	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12250037	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12253137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253556	0.89[ASN][1000 genomes]
rs12257663	0.91[ASN][1000 genomes]
rs12258185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12258439	0.91[ASN][1000 genomes]
rs12259631	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12259834	0.91[ASN][1000 genomes]
rs12261527	0.88[ASN][1000 genomes]
rs12262057	0.88[ASN][1000 genomes]
rs12263089	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12265269	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12266112	0.91[ASN][1000 genomes]
rs12268013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269643	0.95[ASN][1000 genomes]
rs1329652	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13376715	0.91[ASN][1000 genomes]
rs13376868	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1360187	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17106645	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2068866	0.91[ASN][1000 genomes]
rs2421517	0.91[ASN][1000 genomes]
rs3904193	0.91[AFR][1000 genomes]
rs3904194	0.89[AFR][1000 genomes]
rs4376822	0.91[ASN][1000 genomes]
rs4415665	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4586060	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55718133	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55762845	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56097320	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57033814	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57159565	0.91[ASN][1000 genomes]
rs57314370	0.88[ASN][1000 genomes]
rs57988119	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57996677	0.98[ASN][1000 genomes]
rs59198703	0.91[ASN][1000 genomes]
rs59758370	0.91[ASN][1000 genomes]
rs60640820	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61346715	0.84[ASN][1000 genomes]
rs61579794	0.91[ASN][1000 genomes]
rs6583769	0.89[ASN][1000 genomes]
rs6583770	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583775	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583776	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583777	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7072087	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7074559	0.91[ASN][1000 genomes]
rs7075344	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7075424	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7076784	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077014	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077715	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7081363	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7085276	0.91[ASN][1000 genomes]
rs7091647	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7100516	0.88[ASN][1000 genomes]
rs73316210	0.98[ASN][1000 genomes]
rs73316246	0.91[ASN][1000 genomes]
rs73316284	0.88[ASN][1000 genomes]
rs7342052	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74150670	0.84[ASN][1000 genomes]
rs7478184	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7893331	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893826	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894248	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7895666	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7898769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898845	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7904917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905307	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906306	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906515	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7907010	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7907154	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7908457	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7908769	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910115	0.95[ASN][1000 genomes]
rs7910864	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7911332	0.93[ASN][1000 genomes]
rs7914133	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7914794	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7915331	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7920500	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7920553	0.91[ASN][1000 genomes]
rs7920604	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9651433	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9804186	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804311	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9943307	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2189509	chr10:93175562-93176016	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171000-93195000	Weak transcription	Left Ventricle	heart
3	chr10:93171200-93176000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:93171200-93176200	Weak transcription	Brain Substantia Nigra	brain
5	chr10:93171200-93176200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:93171600-93176000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:93171600-93176000	Weak transcription	A549	lung
8	chr10:93171600-93176200	Weak transcription	Fetal Stomach	stomach
9	chr10:93171600-93176200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:93171600-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:93171800-93176200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:93171800-93180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:93172000-93176000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:93172000-93176200	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:93172000-93176800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:93172200-93176800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:93172200-93195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:93172600-93176200	Weak transcription	Brain Anterior Caudate	brain
20	chr10:93172800-93176400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:93172800-93180400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:93172800-93186200	Weak transcription	Ovary	ovary
23	chr10:93173200-93176200	Weak transcription	Small Intestine	intestine
24	chr10:93173200-93194800	Weak transcription	Brain Germinal Matrix	brain
25	chr10:93173600-93176400	Weak transcription	Psoas Muscle	Psoas
26	chr10:93173800-93176800	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr10:93174000-93176400	Enhancers	Osteobl	bone
28	chr10:93174000-93176600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:93174000-93176800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:93174200-93176600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:93174400-93176000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:93174800-93176000	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:93174800-93177000	Weak transcription	Fetal Heart	heart
35	chr10:93175000-93176000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:93175000-93176000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:93175000-93176200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:93175000-93176200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:93175000-93176200	Enhancers	HSMM	muscle
40	chr10:93175000-93176600	Enhancers	Primary T cells from cord blood	blood
41	chr10:93175000-93176800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:93175000-93180400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:93175000-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:93175000-93180600	Weak transcription	NHLF	lung
45	chr10:93175000-93192600	Weak transcription	Fetal Kidney	kidney
46	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
47	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
48	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
49	chr10:93175400-93176000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:93175400-93176000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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