Variant report

Variant	rs12259631
Chromosome Location	chr10:93288037-93288038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93286272..93289010-chr10:93295360..93297242,2	K562	blood:

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10399998	0.87[EUR][1000 genomes]
rs10881917	0.87[EUR][1000 genomes]
rs11186558	0.89[ASN][1000 genomes]
rs11186560	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11186565	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11186567	0.95[ASN][1000 genomes]
rs11186570	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11186573	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186574	1.00[ASN][1000 genomes]
rs11186575	1.00[ASN][1000 genomes]
rs11186580	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186584	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186585	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186586	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186595	1.00[ASN][1000 genomes]
rs11186596	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186597	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186604	0.87[ASN][1000 genomes]
rs11186605	0.89[ASN][1000 genomes]
rs11186606	0.87[ASN][1000 genomes]
rs11186607	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12240706	0.91[ASN][1000 genomes]
rs12241174	0.82[ASN][1000 genomes]
rs12242238	0.89[ASN][1000 genomes]
rs12242257	0.95[ASN][1000 genomes]
rs12242663	1.00[ASN][1000 genomes]
rs12242821	0.91[ASN][1000 genomes]
rs12244155	0.87[ASN][1000 genomes]
rs12245101	0.98[ASN][1000 genomes]
rs12247442	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12247672	0.89[ASN][1000 genomes]
rs12247942	0.85[AFR][1000 genomes]
rs12249854	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12250037	0.95[ASN][1000 genomes]
rs12253137	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12253556	0.98[ASN][1000 genomes]
rs12257663	1.00[ASN][1000 genomes]
rs12258185	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12258439	1.00[ASN][1000 genomes]
rs12259834	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261527	0.98[ASN][1000 genomes]
rs12262057	0.98[ASN][1000 genomes]
rs12263089	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12265269	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266112	1.00[ASN][1000 genomes]
rs12268013	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12269643	0.95[ASN][1000 genomes]
rs1329652	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376715	1.00[ASN][1000 genomes]
rs13376868	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1360187	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106645	0.89[ASN][1000 genomes]
rs17106657	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2068866	1.00[ASN][1000 genomes]
rs2421517	1.00[ASN][1000 genomes]
rs3904193	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3904194	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4376822	1.00[ASN][1000 genomes]
rs4415665	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs55718133	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs57033814	0.89[ASN][1000 genomes]
rs57159565	1.00[ASN][1000 genomes]
rs57314370	0.98[ASN][1000 genomes]
rs57988119	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs59198703	1.00[ASN][1000 genomes]
rs59758370	1.00[ASN][1000 genomes]
rs60640820	0.89[ASN][1000 genomes]
rs61579794	1.00[ASN][1000 genomes]
rs6583769	0.81[ASN][1000 genomes]
rs6583770	0.82[ASN][1000 genomes]
rs6583775	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6583776	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583777	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072087	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074559	1.00[ASN][1000 genomes]
rs7075344	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075424	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076784	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7077014	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7077715	0.89[ASN][1000 genomes]
rs7081363	0.81[ASN][1000 genomes]
rs7085276	1.00[ASN][1000 genomes]
rs7091647	0.86[ASN][1000 genomes]
rs7100516	0.98[ASN][1000 genomes]
rs73316210	0.89[ASN][1000 genomes]
rs73316216	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73316246	1.00[ASN][1000 genomes]
rs73316284	0.98[ASN][1000 genomes]
rs7342052	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7478184	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893331	0.89[ASN][1000 genomes]
rs7893826	0.89[ASN][1000 genomes]
rs7894248	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895666	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898769	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7898845	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904917	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7905307	0.89[ASN][1000 genomes]
rs7906306	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7906515	0.89[ASN][1000 genomes]
rs7907010	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907154	0.84[ASN][1000 genomes]
rs7908457	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908769	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7910115	0.95[ASN][1000 genomes]
rs7910864	0.84[ASN][1000 genomes]
rs7911332	0.84[ASN][1000 genomes]
rs7914133	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914794	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915331	0.89[ASN][1000 genomes]
rs7916523	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7919797	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7920500	0.89[ASN][1000 genomes]
rs7920553	1.00[ASN][1000 genomes]
rs7920604	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651433	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9804186	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9804311	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9943307	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93272200-93296000	Weak transcription	HSMMtube	muscle
2	chr10:93278200-93296000	Weak transcription	HSMM	muscle
3	chr10:93278400-93298400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:93285400-93289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:93286400-93288400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:93287400-93288800	Flanking Active TSS	Liver	Liver
7	chr10:93287600-93288200	Enhancers	Psoas Muscle	Psoas
8	chr10:93287600-93288800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:93287800-93288200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:93288000-93288200	Enhancers	Brain Hippocampus Middle	brain
11	chr10:93288000-93288200	Enhancers	Fetal Lung	lung
12	chr10:93288000-93288400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:93288000-93288400	Enhancers	Gastric	stomach
14	chr10:93288000-93288600	Enhancers	Stomach Mucosa	stomach
15	chr10:93288000-93290000	Enhancers	Pancreas	Pancrea

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