Variant report

Variant	rs7908769
Chromosome Location	chr10:93196926-93196927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93169438..93171176-chr10:93195078..93197545,2	MCF-7	breast:
2	chr10:93168446..93170163-chr10:93194954..93197166,2	K562	blood:
3	chr10:93190689..93192359-chr10:93195947..93197865,2	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11186558	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186560	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186565	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186567	1.00[ASN][1000 genomes]
rs11186570	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186573	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11186575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11186580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11186584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11186585	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11186586	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11186595	0.95[ASN][1000 genomes]
rs11186596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11186597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11186604	0.82[ASN][1000 genomes]
rs11186605	0.84[ASN][1000 genomes]
rs11186606	0.82[ASN][1000 genomes]
rs11186607	0.91[ASN][1000 genomes]
rs12240706	0.95[ASN][1000 genomes]
rs12241174	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12242238	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242257	1.00[ASN][1000 genomes]
rs12242663	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs12242821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12244155	0.82[ASN][1000 genomes]
rs12245101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12247442	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12247672	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12247942	0.97[AFR][1000 genomes]
rs12249854	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250037	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12253137	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12253556	0.93[ASN][1000 genomes]
rs12257663	0.95[ASN][1000 genomes]
rs12258185	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258439	0.95[ASN][1000 genomes]
rs12259631	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12259834	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12261527	0.93[ASN][1000 genomes]
rs12262057	0.93[ASN][1000 genomes]
rs12263089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265269	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12266112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12268013	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12269643	1.00[ASN][1000 genomes]
rs1329652	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13376715	0.95[ASN][1000 genomes]
rs13376868	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17106645	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17106657	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2421517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3904193	0.93[AFR][1000 genomes]
rs3904194	0.91[AFR][1000 genomes]
rs4376822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4415665	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586060	0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55718133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55762845	0.87[ASN][1000 genomes]
rs56097320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57033814	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57159565	0.95[ASN][1000 genomes]
rs57314370	0.93[ASN][1000 genomes]
rs57988119	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57996677	0.93[ASN][1000 genomes]
rs59198703	0.95[ASN][1000 genomes]
rs59758370	0.95[ASN][1000 genomes]
rs60640820	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61346715	0.84[ASN][1000 genomes]
rs61579794	0.95[ASN][1000 genomes]
rs6583769	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs6583770	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6583775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583776	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7072087	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7074559	0.95[ASN][1000 genomes]
rs7075344	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7075424	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7076784	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077014	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077715	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081363	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7085276	0.95[ASN][1000 genomes]
rs7091647	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7100516	0.93[ASN][1000 genomes]
rs73316210	0.93[ASN][1000 genomes]
rs73316216	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73316246	0.95[ASN][1000 genomes]
rs73316284	0.93[ASN][1000 genomes]
rs7342052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7893331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7893826	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7894248	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7895666	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7898769	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898845	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7904917	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7905307	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906306	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906515	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7907010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7907154	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7908457	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7910115	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7910864	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7911332	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7914133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7914794	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7915331	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7916523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919797	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920500	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7920553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7920604	0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9651433	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9804186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9943307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895888	chr10:93176418-93206699	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895889	chr10:93176418-93207971	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
5	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
6	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
7	chr10:93176600-93204000	Weak transcription	Brain Anterior Caudate	brain
8	chr10:93176600-93205400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:93176800-93199800	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:93176800-93203600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:93180800-93203200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:93181200-93197000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:93182200-93207200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:93184000-93203800	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:93184000-93205000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:93185000-93208800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
20	chr10:93186600-93197800	Weak transcription	Fetal Brain Female	brain
21	chr10:93186600-93205600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:93190400-93203400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:93190600-93198600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:93190600-93204200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:93190800-93197000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:93191200-93198600	Weak transcription	Fetal Thymus	thymus
27	chr10:93191800-93197800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr10:93192000-93198200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:93192000-93206600	Weak transcription	Primary B cells from cord blood	blood
30	chr10:93192800-93198800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:93192800-93203200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:93193400-93199200	Weak transcription	Lung	lung
33	chr10:93193400-93205000	Weak transcription	Fetal Stomach	stomach
34	chr10:93193600-93198000	Weak transcription	Fetal Intestine Small	intestine
35	chr10:93193600-93204600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:93193600-93205600	Weak transcription	Liver	Liver
37	chr10:93193800-93197800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:93193800-93204800	Weak transcription	Right Ventricle	heart
39	chr10:93194000-93201800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:93194400-93197000	Weak transcription	HMEC	breast
41	chr10:93194400-93197800	Weak transcription	Osteobl	bone
42	chr10:93194400-93203200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:93194400-93204600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:93194400-93204600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:93194400-93205600	Weak transcription	NH-A	brain
46	chr10:93194600-93198200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:93194600-93198600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:93194600-93204200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:93194600-93213800	Weak transcription	HUVEC	blood vessel
50	chr10:93194800-93197000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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