Variant report

Variant	rs57033814
Chromosome Location	chr10:93168279-93168280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93159316..93160833-chr10:93167746..93169415,2	MCF-7	breast:
2	chr10:93168063..93170852-chr10:93390602..93395151,5	MCF-7	breast:
3	chr10:93168131..93170607-chr10:93391298..93393665,3	MCF-7	breast:
4	chr10:93158520..93160600-chr10:93166963..93169198,3	K562	blood:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs11186558	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186560	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186565	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186567	0.93[ASN][1000 genomes]
rs11186570	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186573	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186574	0.89[ASN][1000 genomes]
rs11186575	0.89[ASN][1000 genomes]
rs11186580	0.89[ASN][1000 genomes]
rs11186584	0.89[ASN][1000 genomes]
rs11186585	0.89[ASN][1000 genomes]
rs11186586	0.89[ASN][1000 genomes]
rs11186595	0.89[ASN][1000 genomes]
rs11186596	0.89[ASN][1000 genomes]
rs11186597	0.89[ASN][1000 genomes]
rs11186607	0.84[ASN][1000 genomes]
rs12240706	0.98[ASN][1000 genomes]
rs12241174	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242238	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242257	0.93[ASN][1000 genomes]
rs12242663	0.89[ASN][1000 genomes]
rs12242821	0.98[ASN][1000 genomes]
rs12245101	0.86[ASN][1000 genomes]
rs12247442	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12247672	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249854	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12250037	0.93[ASN][1000 genomes]
rs12253137	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12253556	0.87[ASN][1000 genomes]
rs12257663	0.89[ASN][1000 genomes]
rs12258185	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12258439	0.89[ASN][1000 genomes]
rs12259631	0.89[ASN][1000 genomes]
rs12259834	0.89[ASN][1000 genomes]
rs12261527	0.86[ASN][1000 genomes]
rs12262057	0.86[ASN][1000 genomes]
rs12263089	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12265269	0.89[ASN][1000 genomes]
rs12266112	0.89[ASN][1000 genomes]
rs12268013	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269643	0.93[ASN][1000 genomes]
rs1329652	0.89[ASN][1000 genomes]
rs13376715	0.89[ASN][1000 genomes]
rs13376868	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1360187	0.89[ASN][1000 genomes]
rs17106645	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106657	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2068866	0.89[ASN][1000 genomes]
rs2421517	0.89[ASN][1000 genomes]
rs4376822	0.89[ASN][1000 genomes]
rs4415665	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4586060	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55718133	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55762845	0.89[ASN][1000 genomes]
rs56097320	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57159565	0.89[ASN][1000 genomes]
rs57314370	0.86[ASN][1000 genomes]
rs57988119	0.89[ASN][1000 genomes]
rs57996677	1.00[ASN][1000 genomes]
rs59198703	0.89[ASN][1000 genomes]
rs59758370	0.89[ASN][1000 genomes]
rs60640820	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61346715	0.82[ASN][1000 genomes]
rs61579794	0.89[ASN][1000 genomes]
rs6583769	0.91[ASN][1000 genomes]
rs6583770	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583775	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583776	0.89[ASN][1000 genomes]
rs6583777	0.89[ASN][1000 genomes]
rs7072087	0.89[ASN][1000 genomes]
rs7074559	0.89[ASN][1000 genomes]
rs7075344	0.89[ASN][1000 genomes]
rs7075424	0.89[ASN][1000 genomes]
rs7076784	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077014	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077715	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081363	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085276	0.89[ASN][1000 genomes]
rs7091647	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7100516	0.86[ASN][1000 genomes]
rs73316210	1.00[ASN][1000 genomes]
rs73316216	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73316246	0.89[ASN][1000 genomes]
rs73316284	0.86[ASN][1000 genomes]
rs7342052	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74150670	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7478184	0.89[ASN][1000 genomes]
rs7893331	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893826	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894248	0.89[ASN][1000 genomes]
rs7895666	0.89[ASN][1000 genomes]
rs7898769	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898845	0.89[ASN][1000 genomes]
rs7904917	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905307	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906306	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906515	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907010	0.89[ASN][1000 genomes]
rs7907154	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7908457	0.89[ASN][1000 genomes]
rs7908769	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910115	0.93[ASN][1000 genomes]
rs7910864	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7911332	0.95[ASN][1000 genomes]
rs7914133	0.89[ASN][1000 genomes]
rs7914794	0.89[ASN][1000 genomes]
rs7915331	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916523	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919797	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7920500	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920553	0.89[ASN][1000 genomes]
rs7920604	0.89[ASN][1000 genomes]
rs9651433	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9804186	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9804311	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9943307	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93162400-93168800	Weak transcription	HSMM	muscle
2	chr10:93162800-93169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93163000-93168400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:93163000-93168800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:93163600-93168400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:93166200-93168600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:93166200-93168600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:93166400-93168800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:93167400-93168600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:93167600-93168400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:93167600-93168400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:93167600-93168600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:93167600-93168600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:93167600-93168600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:93167600-93168600	Enhancers	Fetal Brain Male	brain
16	chr10:93167600-93168800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:93167600-93168800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr10:93167800-93168600	Enhancers	Hela-S3	cervix
19	chr10:93167800-93168800	Weak transcription	Psoas Muscle	Psoas
20	chr10:93168000-93168600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:93168000-93168600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:93168000-93169000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:93168200-93168400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr10:93168200-93168600	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr10:93168200-93168800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:93168200-93168800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:93168200-93170600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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