The 2.0 version of rSNPBase

Variant report

Variant rs55762845
Chromosome Location chr10:93172388-93172389
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:93168800-93172600 Active TSS Aorta Aorta
2 chr10:93168800-93172600 Active TSS Brain Anterior Caudate brain
3 chr10:93170200-93172800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
4 chr10:93170800-93172800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr10:93170800-93204600 Weak transcription Gastric stomach
6 chr10:93171000-93172600 Weak transcription Small Intestine intestine
7 chr10:93171000-93173000 Weak transcription Lung lung
8 chr10:93171000-93173400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr10:93171000-93174200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr10:93171000-93174800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr10:93171000-93175400 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr10:93171000-93195000 Weak transcription Left Ventricle heart
13 chr10:93171200-93172400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr10:93171200-93176000 Weak transcription Brain Cingulate Gyrus brain
15 chr10:93171200-93176200 Weak transcription Brain Substantia Nigra brain
16 chr10:93171200-93176200 Weak transcription Duodenum Mucosa Duodenum
17 chr10:93171400-93173800 Weak transcription HSMMtube muscle
18 chr10:93171400-93175400 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr10:93171600-93172400 Active TSS Fetal Lung lung
20 chr10:93171600-93172400 Weak transcription Ovary ovary
21 chr10:93171600-93172400 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr10:93171600-93172600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr10:93171600-93172600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr10:93171600-93172600 Weak transcription GM12878-XiMat blood
25 chr10:93171600-93172800 Enhancers ES-I3 Cell Line embryonic stem cell
26 chr10:93171600-93172800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr10:93171600-93173000 Weak transcription Psoas Muscle Psoas
28 chr10:93171600-93173400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr10:93171600-93173800 Weak transcription HMEC breast
30 chr10:93171600-93173800 Weak transcription HSMM muscle
31 chr10:93171600-93174000 Enhancers Dnd41 blood
32 chr10:93171600-93174000 Weak transcription NHDF-Ad bronchial
33 chr10:93171600-93175400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr10:93171600-93176000 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr10:93171600-93176000 Weak transcription A549 lung
36 chr10:93171600-93176200 Weak transcription Fetal Stomach stomach
37 chr10:93171600-93176200 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr10:93171600-93180400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr10:93171800-93172400 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
40 chr10:93171800-93172400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
41 chr10:93171800-93172400 Enhancers Fetal Muscle Leg muscle
42 chr10:93171800-93172600 Enhancers HUES48 Cell Line embryonic stem cell
43 chr10:93171800-93172600 Weak transcription Brain Germinal Matrix brain
44 chr10:93171800-93172800 Enhancers Stomach Smooth Muscle stomach
45 chr10:93171800-93174000 Weak transcription Osteobl bone
46 chr10:93171800-93174200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr10:93171800-93174200 Weak transcription Fetal Heart heart
48 chr10:93171800-93174400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr10:93171800-93174400 Weak transcription Brain Hippocampus Middle brain
50 chr10:93171800-93176200 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015