Variant report

Variant	rs73316210
Chromosome Location	chr10:93166203-93166204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr10:93166118-93166420	H1-hESC	embryonic stem cell:	n/a	n/a
2	YY1	chr10:93166042-93166467	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
HECTD2	TF binding region

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs11186558	1.00[ASN][1000 genomes]
rs11186560	0.98[ASN][1000 genomes]
rs11186565	0.95[ASN][1000 genomes]
rs11186567	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186570	0.93[ASN][1000 genomes]
rs11186573	0.89[ASN][1000 genomes]
rs11186574	0.89[ASN][1000 genomes]
rs11186575	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186580	0.89[ASN][1000 genomes]
rs11186584	0.89[ASN][1000 genomes]
rs11186585	0.89[ASN][1000 genomes]
rs11186586	0.89[ASN][1000 genomes]
rs11186595	0.89[ASN][1000 genomes]
rs11186596	0.89[ASN][1000 genomes]
rs11186597	0.89[ASN][1000 genomes]
rs11186607	0.84[ASN][1000 genomes]
rs12240706	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12241174	0.93[ASN][1000 genomes]
rs12242238	1.00[ASN][1000 genomes]
rs12242257	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242663	0.89[ASN][1000 genomes]
rs12242821	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12245101	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12247442	0.89[ASN][1000 genomes]
rs12247672	1.00[ASN][1000 genomes]
rs12249854	0.93[ASN][1000 genomes]
rs12250037	0.93[ASN][1000 genomes]
rs12253137	0.98[ASN][1000 genomes]
rs12253556	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12257663	0.89[ASN][1000 genomes]
rs12258185	0.93[ASN][1000 genomes]
rs12258439	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12259631	0.89[ASN][1000 genomes]
rs12259834	0.89[ASN][1000 genomes]
rs12261527	0.86[ASN][1000 genomes]
rs12262057	0.86[ASN][1000 genomes]
rs12263089	0.93[ASN][1000 genomes]
rs12265269	0.89[ASN][1000 genomes]
rs12266112	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12268013	0.98[ASN][1000 genomes]
rs12269643	0.93[ASN][1000 genomes]
rs1329652	0.89[ASN][1000 genomes]
rs13376715	0.89[ASN][1000 genomes]
rs13376868	0.93[ASN][1000 genomes]
rs1360187	0.89[ASN][1000 genomes]
rs17106645	1.00[ASN][1000 genomes]
rs17106657	0.93[ASN][1000 genomes]
rs2068866	0.89[ASN][1000 genomes]
rs2421517	0.89[ASN][1000 genomes]
rs4376822	0.89[ASN][1000 genomes]
rs4415665	0.93[ASN][1000 genomes]
rs4586060	0.89[ASN][1000 genomes]
rs55718133	0.89[ASN][1000 genomes]
rs55762845	0.89[ASN][1000 genomes]
rs56097320	0.93[ASN][1000 genomes]
rs57033814	1.00[ASN][1000 genomes]
rs57159565	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57314370	0.86[ASN][1000 genomes]
rs57988119	0.89[ASN][1000 genomes]
rs57996677	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59198703	0.89[ASN][1000 genomes]
rs59758370	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60640820	1.00[ASN][1000 genomes]
rs61346715	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61579794	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6583769	0.91[ASN][1000 genomes]
rs6583770	0.93[ASN][1000 genomes]
rs6583775	0.89[ASN][1000 genomes]
rs6583776	0.89[ASN][1000 genomes]
rs6583777	0.89[ASN][1000 genomes]
rs7072087	0.89[ASN][1000 genomes]
rs7074559	0.89[ASN][1000 genomes]
rs7075344	0.89[ASN][1000 genomes]
rs7075424	0.89[ASN][1000 genomes]
rs7076784	0.93[ASN][1000 genomes]
rs7077014	0.93[ASN][1000 genomes]
rs7077715	1.00[ASN][1000 genomes]
rs7081363	0.91[ASN][1000 genomes]
rs7085276	0.89[ASN][1000 genomes]
rs7091647	0.98[ASN][1000 genomes]
rs7100516	0.86[ASN][1000 genomes]
rs73316216	0.98[ASN][1000 genomes]
rs73316246	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73316284	0.86[ASN][1000 genomes]
rs7342052	0.93[ASN][1000 genomes]
rs74150670	0.86[ASN][1000 genomes]
rs7478184	0.89[ASN][1000 genomes]
rs7893331	1.00[ASN][1000 genomes]
rs7893826	1.00[ASN][1000 genomes]
rs7894248	0.89[ASN][1000 genomes]
rs7895666	0.89[ASN][1000 genomes]
rs7898769	0.98[ASN][1000 genomes]
rs7898845	0.89[ASN][1000 genomes]
rs7904917	0.98[ASN][1000 genomes]
rs7905307	1.00[ASN][1000 genomes]
rs7906306	0.93[ASN][1000 genomes]
rs7906515	1.00[ASN][1000 genomes]
rs7907010	0.89[ASN][1000 genomes]
rs7907154	0.95[ASN][1000 genomes]
rs7908457	0.89[ASN][1000 genomes]
rs7908769	0.93[ASN][1000 genomes]
rs7910115	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910864	0.95[ASN][1000 genomes]
rs7911332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914133	0.89[ASN][1000 genomes]
rs7914794	0.89[ASN][1000 genomes]
rs7915331	1.00[ASN][1000 genomes]
rs7916523	0.98[ASN][1000 genomes]
rs7919797	0.93[ASN][1000 genomes]
rs7920500	1.00[ASN][1000 genomes]
rs7920553	0.89[ASN][1000 genomes]
rs7920604	0.89[ASN][1000 genomes]
rs9651433	0.87[ASN][1000 genomes]
rs9804186	0.93[ASN][1000 genomes]
rs9804311	0.89[ASN][1000 genomes]
rs9943307	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93162400-93168800	Weak transcription	HSMM	muscle
2	chr10:93162800-93169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93163000-93167600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:93163000-93168400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:93163000-93168800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:93163600-93168400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:93164600-93166600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:93164600-93166600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:93164600-93166600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:93164800-93167000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:93164800-93167600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:93165000-93167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:93165600-93167600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:93166200-93166400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr10:93166200-93166400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:93166200-93167600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:93166200-93168600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:93166200-93168600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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