Variant report

Variant	rs10463192
Chromosome Location	chr5:94868346-94868347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94866250..94868865-chr5:94878722..94881259,2	K562	blood:
2	chr5:94866645..94870389-chr5:94889293..94892013,3	K562	blood:

Variant related genes	Relation type
ENSG00000164291	Chromatin interaction
ENSG00000198677	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10054246	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515227	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11949551	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960723	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153544	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188620	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084910	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084916	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084924	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964334	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2161258	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909479	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3948561	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518428	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55839939	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56124625	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529864	1.00[ASN][1000 genomes]
rs59492293	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882491	1.00[ASN][1000 genomes]
rs6883612	1.00[ASN][1000 genomes]
rs73141965	1.00[ASN][1000 genomes]
rs73143927	1.00[ASN][1000 genomes]
rs7349776	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349780	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777191	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777195	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777196	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777198	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777206	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73777207	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777210	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777223	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73777226	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777227	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777229	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777230	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7705631	1.00[ASN][1000 genomes]
rs7716598	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972390	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10463192	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:94828600-94873600	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
10	chr5:94831400-94868400	Strong transcription	Fetal Intestine Large	intestine
11	chr5:94835200-94881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:94841400-94883400	Strong transcription	Primary B cells from cord blood	blood
13	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr5:94842000-94873600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:94842000-94884800	Strong transcription	Dnd41	blood
16	chr5:94842200-94882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr5:94843800-94870200	Strong transcription	HUVEC	blood vessel
19	chr5:94845600-94879800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:94846600-94881000	Weak transcription	Gastric	stomach
21	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:94849400-94871400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:94849800-94872000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr5:94849800-94878200	Weak transcription	Fetal Intestine Small	intestine
26	chr5:94849800-94879800	Weak transcription	Fetal Stomach	stomach
27	chr5:94849800-94881400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:94850600-94879200	Weak transcription	Small Intestine	intestine
29	chr5:94851200-94869000	Weak transcription	Brain Angular Gyrus	brain
30	chr5:94851800-94881200	Weak transcription	Right Ventricle	heart
31	chr5:94853800-94879800	Weak transcription	Lung	lung
32	chr5:94853800-94880400	Weak transcription	Pancreas	Pancrea
33	chr5:94853800-94890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:94854800-94870000	Weak transcription	Ovary	ovary
35	chr5:94854800-94870400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:94855800-94878400	Strong transcription	Liver	Liver
37	chr5:94857600-94884800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr5:94860200-94868400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:94860600-94875800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:94863000-94872800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:94863000-94874600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr5:94864400-94889400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr5:94865000-94872400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr5:94865200-94871600	Weak transcription	Colonic Mucosa	Colon
45	chr5:94865200-94875600	Weak transcription	Psoas Muscle	Psoas
46	chr5:94865200-94880200	Weak transcription	Spleen	Spleen
47	chr5:94865200-94889400	Weak transcription	Esophagus	oesophagus
48	chr5:94865200-94890000	Weak transcription	Aorta	Aorta
49	chr5:94865400-94871400	Weak transcription	Fetal Brain Female	brain
50	chr5:94865400-94872000	Weak transcription	A549	lung

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