Variant report

Variant	rs17084924
Chromosome Location	chr5:94938392-94938393
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94892921..94894446-chr5:94936701..94939146,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10054246	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463192	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515227	0.87[EUR][1000 genomes]
rs11949551	0.91[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960723	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055264	0.81[CEU][hapmap]
rs12153544	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188620	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084869	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084910	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084916	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964334	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2161258	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3948561	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518428	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710829	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55839939	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56124625	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529864	1.00[ASN][1000 genomes]
rs59492293	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861524	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882491	1.00[ASN][1000 genomes]
rs6883612	1.00[ASN][1000 genomes]
rs73141965	1.00[ASN][1000 genomes]
rs73143927	1.00[ASN][1000 genomes]
rs7349776	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349780	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777191	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777195	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777196	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777198	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777206	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73777207	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777210	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777218	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777223	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73777226	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777227	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777229	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777230	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7705631	1.00[ASN][1000 genomes]
rs7716598	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972390	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17084924	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94900400-94942400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:94904600-94939400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr5:94905000-94939200	Weak transcription	Aorta	Aorta
4	chr5:94905000-94940600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:94912800-94943400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:94915000-94939000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:94917400-94940800	Weak transcription	Fetal Brain Male	brain
8	chr5:94926400-94941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:94926800-94938600	Weak transcription	K562	blood
10	chr5:94926800-94942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:94927000-94940800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:94927000-94948800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:94927000-94954200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:94927000-94954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:94927400-94938400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:94927600-94951800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:94927800-94941200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:94927800-94952200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:94928200-94938400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:94928200-94952200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:94928400-94948600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:94928600-94941800	Weak transcription	HMEC	breast
23	chr5:94933600-94948600	Weak transcription	Pancreas	Pancrea
24	chr5:94935000-94940000	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:94935200-94941000	Weak transcription	Fetal Stomach	stomach
26	chr5:94935200-94942000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:94935800-94939200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:94936000-94938600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:94936200-94938600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:94936400-94939600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:94936800-94938400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr5:94937000-94940800	Weak transcription	Osteobl	bone
33	chr5:94937000-94941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:94937000-94943400	Weak transcription	Fetal Muscle Leg	muscle
35	chr5:94937200-94939000	Weak transcription	Adipose Nuclei	Adipose
36	chr5:94937200-94939000	Weak transcription	Fetal Kidney	kidney
37	chr5:94937200-94940800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:94937200-94948200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:94937400-94945400	Weak transcription	Fetal Lung	lung
40	chr5:94937400-94948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:94937600-94938400	Weak transcription	Dnd41	blood
42	chr5:94937600-94939000	Weak transcription	Liver	Liver
43	chr5:94937600-94952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:94937800-94940600	Weak transcription	Fetal Intestine Large	intestine
45	chr5:94937800-94941800	Weak transcription	Ovary	ovary
46	chr5:94937800-94942200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:94937800-94943200	Weak transcription	Primary B cells from cord blood	blood
48	chr5:94937800-94943400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr5:94937800-94945600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr5:94938000-94938800	Enhancers	Placenta Amnion	Placenta Amnion

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