Variant report

Variant	rs1964334
Chromosome Location	chr5:94889277-94889278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RPC155	chr5:94889149-94889731	Hela-S3	cervix:	n/a	n/a
2	GATA3	chr5:94889202-94890043	MCF-7	breast:	n/a	chr5:94889213-94889224
3	GTF3C2	chr5:94889255-94889690	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:94888891..94893786-chr5:94981389..94987516,11	K562	blood:
2	chr5:94877399..94880074-chr5:94889020..94891541,2	MCF-7	breast:
3	chr5:94885448..94888187-chr5:94888844..94890737,5	K562	blood:

Variant related genes	Relation type
ARSK	TF binding region
TTC37	TF binding region
ENSG00000198677	Chromatin interaction
ENSG00000175449	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10054246	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463192	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515227	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11949551	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960723	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153544	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188620	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084869	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084910	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084916	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084924	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2161258	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909479	0.81[EUR][1000 genomes]
rs3948561	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518428	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710829	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55839939	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56124625	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529864	1.00[ASN][1000 genomes]
rs59492293	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861524	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882491	1.00[ASN][1000 genomes]
rs6883612	1.00[ASN][1000 genomes]
rs73141965	1.00[ASN][1000 genomes]
rs73143927	1.00[ASN][1000 genomes]
rs7349776	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349780	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777191	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777195	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777196	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777198	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777206	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73777207	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777210	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777218	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777223	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73777226	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777227	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777229	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777230	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7705631	1.00[ASN][1000 genomes]
rs7716598	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972390	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1964334	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:94853800-94890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:94864400-94889400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:94865200-94889400	Weak transcription	Esophagus	oesophagus
8	chr5:94865200-94890000	Weak transcription	Aorta	Aorta
9	chr5:94877600-94889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:94878400-94889400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:94879600-94889600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:94881000-94889600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:94881400-94889400	Weak transcription	Brain Substantia Nigra	brain
14	chr5:94881400-94889600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:94881600-94889600	Weak transcription	Thymus	Thymus
16	chr5:94881800-94889400	Weak transcription	Colonic Mucosa	Colon
17	chr5:94881800-94889400	Weak transcription	Spleen	Spleen
18	chr5:94882400-94889400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:94882400-94889400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:94882400-94889400	Weak transcription	Lung	lung
21	chr5:94882400-94889400	Weak transcription	Pancreas	Pancrea
22	chr5:94882400-94889400	Weak transcription	Right Ventricle	heart
23	chr5:94882400-94889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:94882400-94889600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:94882400-94889600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:94882400-94889600	Weak transcription	Fetal Stomach	stomach
27	chr5:94883000-94889400	Weak transcription	Gastric	stomach
28	chr5:94883000-94889400	Weak transcription	K562	blood
29	chr5:94883000-94889600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr5:94883000-94889600	Weak transcription	Left Ventricle	heart
31	chr5:94883000-94889600	Weak transcription	HSMMtube	muscle
32	chr5:94883000-94890000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr5:94883200-94889400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr5:94883200-94889600	Weak transcription	Fetal Muscle Leg	muscle
35	chr5:94883200-94889600	Weak transcription	Ovary	ovary
36	chr5:94883600-94889400	Weak transcription	HUVEC	blood vessel
37	chr5:94883600-94889600	Weak transcription	A549	lung
38	chr5:94885000-94889400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr5:94885000-94889400	Weak transcription	NH-A	brain
40	chr5:94885200-94889400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr5:94885200-94889400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr5:94885200-94889600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:94885200-94889600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:94885400-94889600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:94885800-94889400	Weak transcription	Fetal Lung	lung
46	chr5:94886000-94889400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr5:94886000-94889400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr5:94886000-94889400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr5:94886000-94889400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:94886000-94889400	Weak transcription	Adipose Nuclei	Adipose

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