Variant report

Variant	rs73777218
Chromosome Location	chr5:94879975-94879976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:94879974-94880024	NB4	blood:	n/a
2	chr5:94879974-94880024	GM12891	blood:	n/a
3	chr5:94879974-94880024	AG10803	skin:	n/a
4	chr5:94879974-94880024	MCF-7	breast:	n/a
5	chr5:94879974-94880024	LNCaP	prostate:	n/a
6	chr5:94879974-94880024	HUVEC	blood vessel:	n/a
7	chr5:94879974-94880024	HRCEpiC	kidney:	n/a
8	chr5:94879974-94880024	NHBE	bronchial:	n/a
9	chr5:94879974-94880024	H1-hESC	embryonic stem cell:	embryo
10	chr5:94879974-94880024	HNPCEpiC	eye:	n/a
11	chr5:94879974-94880024	K562	blood:	n/a
12	chr5:94879974-94880024	IMR90	lung:	fetal
13	chr5:94879974-94880024	HRPEpiC	eye:	n/a
14	chr5:94879974-94880024	GM19239	blood:	n/a
15	chr5:94879974-94880024	AG09309	skin:	n/a
16	chr5:94879974-94880024	HL-60	blood:	n/a
17	chr5:94879974-94880024	A549	lung:	n/a
18	chr5:94879974-94880024	HRE	kidney:	n/a
19	chr5:94879974-94880024	HCT-116	colon:	n/a
20	chr5:94879974-94880024	HCF	heart:	n/a
21	chr5:94879974-94880024	HepG2	liver:	n/a
22	chr5:94879974-94880024	HMEC	breast:	n/a
23	chr5:94879974-94880024	AG04449	skin:	fetal
24	chr5:94879974-94880024	BJ	skin:	n/a
25	chr5:94879974-94880024	HAEpiC	amniotic membrane:	n/a
26	chr5:94879974-94880024	SK-N-SH_RA	brain:	n/a
27	chr5:94879974-94880024	SK-N-MC	brain:	n/a
28	chr5:94879974-94880024	BE2_C	brain:	n/a
29	chr5:94879974-94880024	Hepatocyte	liver:	n/a
30	chr5:94879974-94880024	AoSMC	blood vessel:	n/a
31	chr5:94879974-94880024	T-47D	breast:	n/a
32	chr5:94879974-94880024	ECC-1	luminal epithelium:	n/a
33	chr5:94879974-94880024	U87	brain:	n/a
34	chr5:94879974-94880024	SKMC	muscle:	n/a
35	chr5:94879974-94880024	NH-A	brain:	n/a
36	chr5:94879974-94880024	ovcar-3	ovarian:	n/a
37	chr5:94879974-94880024	HPAEpiC	pulmonary alveolar:	n/a
38	chr5:94879974-94880024	GM06990	blood:	n/a
39	chr5:94879974-94880024	HEK293	kidney:	embryo
40	chr5:94879974-94880024	AG04450	lung:	fetal
41	chr5:94879974-94880024	NT2-D1	testis:	n/a
42	chr5:94879974-94880024	AG09319	gingival:	n/a
43	chr5:94879974-94880024	PrEC	prostate:	n/a
44	chr5:94879974-94880024	PANC-1	pancreas:	n/a
45	chr5:94879974-94880024	HCM	heart:	n/a
46	chr5:94879974-94880024	MCF10A-Er-Src	breast:	n/a
47	chr5:94879974-94880024	CMK	blood:	n/a
48	chr5:94879974-94880024	NHDF-neo	bronchial:	n/a
49	chr5:94879974-94880024	GM12892	blood:	n/a
50	chr5:94879974-94880024	GM12878	blood:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:94873172..94877407-chr5:94878582..94881962,4	K562	blood:
2	chr5:94877399..94880074-chr5:94889020..94891541,2	MCF-7	breast:
3	chr5:94866250..94868865-chr5:94878722..94881259,2	K562	blood:

No data

Variant related genes	Relation type
TTC37	CpG island
ENSG00000198677	Chromatin interaction
ENSG00000164291	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10054246	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515227	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11949551	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960723	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153544	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188620	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084910	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084916	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084924	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964334	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2161258	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909479	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3948561	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518428	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55839939	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56124625	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529864	1.00[ASN][1000 genomes]
rs59492293	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861524	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882491	1.00[ASN][1000 genomes]
rs6883612	1.00[ASN][1000 genomes]
rs73141965	1.00[ASN][1000 genomes]
rs73143927	1.00[ASN][1000 genomes]
rs7349776	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349780	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777191	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777195	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777196	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777198	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777206	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73777207	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777210	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777223	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73777226	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777227	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777229	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777230	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7705631	1.00[ASN][1000 genomes]
rs7716598	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972390	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73777218	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
9	chr5:94835200-94881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:94841400-94883400	Strong transcription	Primary B cells from cord blood	blood
11	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:94842000-94884800	Strong transcription	Dnd41	blood
13	chr5:94842200-94882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr5:94846600-94881000	Weak transcription	Gastric	stomach
16	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:94849800-94881400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:94851800-94881200	Weak transcription	Right Ventricle	heart
20	chr5:94853800-94880400	Weak transcription	Pancreas	Pancrea
21	chr5:94853800-94890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:94857600-94884800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:94864400-94889400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:94865200-94880200	Weak transcription	Spleen	Spleen
25	chr5:94865200-94889400	Weak transcription	Esophagus	oesophagus
26	chr5:94865200-94890000	Weak transcription	Aorta	Aorta
27	chr5:94866000-94880200	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:94866400-94880200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:94866600-94881000	Weak transcription	NHEK	skin
30	chr5:94867400-94880800	Weak transcription	Fetal Heart	heart
31	chr5:94867400-94886000	Strong transcription	Adipose Nuclei	Adipose
32	chr5:94868800-94886000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:94869400-94883000	Strong transcription	Primary hematopoietic stem cells	blood
34	chr5:94869400-94889000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:94869600-94883200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr5:94869800-94881400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr5:94870000-94883000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr5:94870000-94886200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:94870200-94885800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:94870200-94889000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr5:94870400-94883200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:94870400-94885000	Strong transcription	NH-A	brain
43	chr5:94870400-94886000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:94870400-94886000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:94870800-94882200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr5:94871400-94886000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr5:94871400-94886400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:94871800-94880200	Weak transcription	HMEC	breast
49	chr5:94872200-94880800	Weak transcription	Colonic Mucosa	Colon
50	chr5:94872800-94881000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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