Variant report

Variant	rs6883612
Chromosome Location	chr5:94773149-94773150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94772779..94775634-chr5:94777609..94779631,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10054246	1.00[ASN][1000 genomes]
rs10463192	1.00[ASN][1000 genomes]
rs10515227	0.84[EUR][1000 genomes]
rs11949551	1.00[ASN][1000 genomes]
rs11960723	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153544	1.00[ASN][1000 genomes]
rs12188620	1.00[ASN][1000 genomes]
rs17084869	1.00[ASN][1000 genomes]
rs17084910	1.00[ASN][1000 genomes]
rs17084916	1.00[ASN][1000 genomes]
rs17084924	1.00[ASN][1000 genomes]
rs1964334	1.00[ASN][1000 genomes]
rs2161258	1.00[ASN][1000 genomes]
rs3909479	0.93[EUR][1000 genomes]
rs3948561	1.00[ASN][1000 genomes]
rs4518428	1.00[ASN][1000 genomes]
rs55839939	1.00[ASN][1000 genomes]
rs56124625	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529864	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59492293	1.00[ASN][1000 genomes]
rs6861524	1.00[ASN][1000 genomes]
rs6882491	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141965	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73143927	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349776	1.00[ASN][1000 genomes]
rs7349780	1.00[ASN][1000 genomes]
rs73777191	1.00[ASN][1000 genomes]
rs73777195	1.00[ASN][1000 genomes]
rs73777196	1.00[ASN][1000 genomes]
rs73777198	1.00[ASN][1000 genomes]
rs73777206	0.84[EUR][1000 genomes]
rs73777207	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777210	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777218	1.00[ASN][1000 genomes]
rs73777226	1.00[ASN][1000 genomes]
rs73777227	1.00[ASN][1000 genomes]
rs73777229	1.00[ASN][1000 genomes]
rs73777230	1.00[ASN][1000 genomes]
rs7534	0.84[EUR][1000 genomes]
rs7705631	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716598	1.00[ASN][1000 genomes]
rs972390	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6883612	TTC37	cis	Whole Blood	GTEx
rs6883612	TTC37	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94768600-94776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:94771200-94775600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:94772400-94773400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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