Variant report

Variant	rs73777226
Chromosome Location	chr5:94902137-94902138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94895692..94898424-chr5:94902068..94903763,2	K562	blood:
2	chr5:94897161..94899128-chr5:94900453..94902701,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10054246	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463192	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515227	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11949551	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960723	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188620	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084869	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084916	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084924	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964334	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2161258	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3948561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710829	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55839939	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56124625	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529864	1.00[ASN][1000 genomes]
rs59492293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861524	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882491	1.00[ASN][1000 genomes]
rs6883612	1.00[ASN][1000 genomes]
rs73141965	1.00[ASN][1000 genomes]
rs73143927	1.00[ASN][1000 genomes]
rs7349776	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349780	1.00[ASN][1000 genomes]
rs73777191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777195	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777196	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777206	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73777207	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777210	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777218	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777223	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73777227	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777230	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7705631	1.00[ASN][1000 genomes]
rs7716598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830408	chr5:94894032-94915995	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73777226	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94891800-94902800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:94892000-94906200	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:94892200-94902400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94892200-94903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:94892200-94904400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:94892200-94904400	Weak transcription	Aorta	Aorta
7	chr5:94892200-94906000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:94892200-94906800	Weak transcription	Fetal Kidney	kidney
9	chr5:94892200-94907200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:94892200-94907400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:94892200-94934400	Weak transcription	Fetal Stomach	stomach
12	chr5:94892200-94936600	Weak transcription	Fetal Lung	lung
13	chr5:94892400-94902200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:94892400-94902400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:94892400-94902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr5:94892400-94902400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr5:94892400-94902600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:94892400-94902600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:94892400-94902600	Weak transcription	Primary B cells from cord blood	blood
20	chr5:94892400-94902600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:94892400-94902800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:94892400-94902800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:94892400-94902800	Weak transcription	Left Ventricle	heart
24	chr5:94892400-94902800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr5:94892400-94902800	Weak transcription	GM12878-XiMat	blood
26	chr5:94892400-94903000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:94892400-94903000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr5:94892400-94903000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:94892400-94903400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:94892400-94903400	Weak transcription	Fetal Intestine Large	intestine
31	chr5:94892400-94904200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr5:94892400-94904400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr5:94892400-94904400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:94892400-94905600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr5:94892400-94905800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr5:94892400-94906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:94892400-94906600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr5:94892400-94907600	Weak transcription	Colon Smooth Muscle	Colon
39	chr5:94892400-94908800	Weak transcription	HepG2	liver
40	chr5:94892400-94910200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr5:94892400-94911200	Weak transcription	HMEC	breast
42	chr5:94892400-94921000	Weak transcription	Psoas Muscle	Psoas
43	chr5:94892400-94922400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr5:94892400-94926000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:94892400-94926200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr5:94892400-94926200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr5:94892400-94926200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr5:94892400-94926600	Weak transcription	NH-A	brain
49	chr5:94892400-94937200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr5:94892600-94902400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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