Variant report

Variant	rs10482865
Chromosome Location	chr21:16511502-16511503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16435217..16437812-chr21:16511090..16513658,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1107603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17241137	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403879	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2823072	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2823073	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2823090	1.00[EUR][1000 genomes]
rs41417546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41475045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap]
rs56774948	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57145147	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58600183	0.86[EUR][1000 genomes]
rs59067564	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59121161	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59808093	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60733877	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60840750	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61195764	1.00[EUR][1000 genomes]
rs61284713	1.00[EUR][1000 genomes]
rs7275982	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7276254	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7276414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7283880	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73174559	1.00[AFR][1000 genomes]
rs73340856	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73891984	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8127201	0.81[EUR][1000 genomes]
rs9789844	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16506600-16512600	Weak transcription	Left Ventricle	heart
2	chr21:16507600-16512000	Weak transcription	Fetal Kidney	kidney
3	chr21:16507600-16513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:16508000-16514600	Enhancers	Primary hematopoietic stem cells	blood
5	chr21:16509200-16512600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr21:16509200-16512600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr21:16509400-16514600	Enhancers	Fetal Muscle Leg	muscle
8	chr21:16509800-16514600	Enhancers	Fetal Intestine Small	intestine
9	chr21:16509800-16514800	Enhancers	Fetal Intestine Large	intestine
10	chr21:16510000-16511800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr21:16510000-16512400	Enhancers	Small Intestine	intestine
12	chr21:16510000-16513600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr21:16510000-16513800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr21:16510000-16514400	Enhancers	Brain Germinal Matrix	brain
15	chr21:16510200-16513000	Enhancers	Stomach Mucosa	stomach
16	chr21:16510200-16513600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr21:16510200-16514600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr21:16510400-16512200	Enhancers	HepG2	liver
19	chr21:16510400-16513600	Enhancers	Fetal Brain Male	brain
20	chr21:16510600-16511800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr21:16510600-16512200	Enhancers	Liver	Liver
22	chr21:16510800-16511600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr21:16510800-16512000	Enhancers	Pancreas	Pancrea
24	chr21:16510800-16512400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr21:16510800-16513200	Enhancers	Fetal Stomach	stomach
26	chr21:16510800-16513200	Enhancers	Psoas Muscle	Psoas
27	chr21:16510800-16513800	Enhancers	Colonic Mucosa	Colon
28	chr21:16510800-16514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr21:16511000-16512200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr21:16511000-16512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr21:16511000-16512800	Weak transcription	Right Atrium	heart
32	chr21:16511000-16513600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr21:16511200-16511800	Enhancers	Fetal Brain Female	brain
34	chr21:16511200-16512400	Weak transcription	Brain Hippocampus Middle	brain
35	chr21:16511200-16512400	Enhancers	Duodenum Mucosa	Duodenum
36	chr21:16511200-16512400	Weak transcription	Gastric	stomach
37	chr21:16511200-16512600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr21:16511200-16512600	Weak transcription	Ovary	ovary
39	chr21:16511200-16514000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr21:16511200-16514000	Weak transcription	Esophagus	oesophagus
41	chr21:16511200-16514000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr21:16511200-16516200	Weak transcription	Adipose Nuclei	Adipose
43	chr21:16511400-16511800	Weak transcription	Fetal Lung	lung
44	chr21:16511400-16512200	Enhancers	A549	lung
45	chr21:16511400-16512400	Weak transcription	Brain Substantia Nigra	brain
46	chr21:16511400-16512600	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr21:16511400-16513800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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