Variant report

Variant	rs9789844
Chromosome Location	chr21:16503225-16503226
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16435087..16439226-chr21:16501116..16506169,12	MCF-7	breast:
2	chr21:16436996..16438958-chr21:16502979..16505595,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10482865	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107603	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17241137	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2403879	1.00[EUR][1000 genomes]
rs2823072	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823073	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2823078	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823090	1.00[EUR][1000 genomes]
rs41417546	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56774948	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57145147	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58600183	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59067564	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59121161	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59808093	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60733877	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60840750	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61195764	1.00[EUR][1000 genomes]
rs61284713	1.00[EUR][1000 genomes]
rs7275982	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276254	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276414	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7283880	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73340856	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73891984	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8127201	0.81[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16499800-16506400	Weak transcription	Left Ventricle	heart
2	chr21:16500400-16505800	Weak transcription	Small Intestine	intestine
3	chr21:16500600-16510800	Weak transcription	Psoas Muscle	Psoas
4	chr21:16500800-16505800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr21:16501200-16506000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr21:16501400-16505600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr21:16501800-16506600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr21:16502000-16503800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr21:16502000-16506200	Enhancers	Primary hematopoietic stem cells	blood
10	chr21:16502200-16506600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr21:16502800-16503400	Weak transcription	Fetal Muscle Leg	muscle
12	chr21:16503000-16507200	Weak transcription	HMEC	breast

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