Variant report

Variant	rs1107603
Chromosome Location	chr21:16502176-16502177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16500793..16502464-chr21:16513166..16515545,2	MCF-7	breast:
2	chr21:16435087..16439226-chr21:16501116..16506169,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10482865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17241137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2403879	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2823072	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2823078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823090	1.00[EUR][1000 genomes]
rs41417546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41475045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap]
rs56774948	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57145147	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58600183	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59067564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59121161	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59808093	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60733877	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60840750	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61195764	1.00[EUR][1000 genomes]
rs61284713	1.00[EUR][1000 genomes]
rs7275982	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276254	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7283880	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73340856	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73891984	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8127201	0.81[EUR][1000 genomes]
rs9789844	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16494200-16502600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:16494400-16502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr21:16499800-16502600	Weak transcription	Fetal Muscle Leg	muscle
4	chr21:16499800-16506400	Weak transcription	Left Ventricle	heart
5	chr21:16500400-16505800	Weak transcription	Small Intestine	intestine
6	chr21:16500600-16510800	Weak transcription	Psoas Muscle	Psoas
7	chr21:16500800-16502200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:16500800-16505800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr21:16501200-16506000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr21:16501400-16505600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr21:16501800-16506600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr21:16502000-16503800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr21:16502000-16506200	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links