Variant report

Variant	rs56774948
Chromosome Location	chr21:16490041-16490042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16437247..16438888-chr21:16488928..16490925,2	MCF-7	breast:
2	chr21:16488938..16491130-chr21:16498668..16501646,2	K562	blood:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10482865	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1107603	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17241137	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2403879	1.00[EUR][1000 genomes]
rs2823072	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2823073	1.00[EUR][1000 genomes]
rs2823078	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2823090	1.00[EUR][1000 genomes]
rs41417546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57145147	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58600183	0.86[EUR][1000 genomes]
rs59067564	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59121161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59808093	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60733877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60840750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61195764	1.00[EUR][1000 genomes]
rs61284713	1.00[EUR][1000 genomes]
rs7275982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7276254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276414	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7283880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73340856	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73891984	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8127201	0.81[EUR][1000 genomes]
rs9789844	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16482200-16491000	Weak transcription	Fetal Brain Male	brain
2	chr21:16490000-16490400	Weak transcription	Esophagus	oesophagus

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