Variant report

Variant	rs2823078
Chromosome Location	chr21:16507952-16507953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16437280..16439325-chr21:16507347..16510340,2	MCF-7	breast:
2	chr21:16507551..16509625-chr21:16582039..16584912,2	MCF-7	breast:
3	chr21:16506016..16509076-chr21:16569179..16572213,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10482865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17241137	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403879	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2823072	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823073	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2823090	1.00[EUR][1000 genomes]
rs41417546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41475045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap]
rs56774948	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57145147	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58600183	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59067564	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59121161	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59808093	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60733877	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60840750	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61195764	1.00[EUR][1000 genomes]
rs61284713	1.00[EUR][1000 genomes]
rs7275982	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7276254	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7283880	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73340856	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73891984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8127201	0.81[EUR][1000 genomes]
rs9789844	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16500600-16510800	Weak transcription	Psoas Muscle	Psoas
2	chr21:16504000-16509400	Weak transcription	Fetal Muscle Leg	muscle
3	chr21:16504600-16509400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr21:16505600-16508000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr21:16505800-16508000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:16505800-16509000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr21:16505800-16509000	Enhancers	Duodenum Mucosa	Duodenum
8	chr21:16506000-16509000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr21:16506600-16508000	Enhancers	NHEK	skin
10	chr21:16506600-16512600	Weak transcription	Left Ventricle	heart
11	chr21:16506800-16508000	Enhancers	Stomach Mucosa	stomach
12	chr21:16506800-16509400	Weak transcription	Small Intestine	intestine
13	chr21:16507200-16509200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr21:16507400-16510800	Weak transcription	Pancreas	Pancrea
15	chr21:16507600-16508200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr21:16507600-16508600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr21:16507600-16508600	Weak transcription	Hela-S3	cervix
18	chr21:16507600-16509800	Weak transcription	Fetal Intestine Large	intestine
19	chr21:16507600-16512000	Weak transcription	Fetal Kidney	kidney
20	chr21:16507600-16513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr21:16507800-16508000	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr21:16507800-16508200	Enhancers	Rectal Mucosa Donor 29	rectum

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