Variant report

Variant	rs2823072
Chromosome Location	chr21:16497060-16497061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16495374..16497178-chr21:16575873..16578741,2	MCF-7	breast:
2	chr21:16493234..16497215-chr21:16543613..16545905,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10482865	0.95[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107603	0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17241137	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2228508	1.00[TSI][hapmap]
rs2403879	0.86[EUR][1000 genomes]
rs2823073	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2823078	0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823090	0.86[EUR][1000 genomes]
rs41417546	0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41475045	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap]
rs56774948	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57145147	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58600183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59067564	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59121161	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59808093	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60733877	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60840750	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61195764	0.86[EUR][1000 genomes]
rs61284713	0.86[EUR][1000 genomes]
rs7275982	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7276254	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276414	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7283880	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73340856	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73891984	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8127081	0.83[EUR][1000 genomes]
rs9789844	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16493000-16497600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr21:16494200-16499400	Weak transcription	Right Ventricle	heart
3	chr21:16494200-16502600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr21:16494400-16499400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr21:16494400-16502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr21:16494800-16498600	Weak transcription	Spleen	Spleen
7	chr21:16494800-16499200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr21:16495000-16497200	Weak transcription	Small Intestine	intestine
9	chr21:16495000-16499400	Weak transcription	Left Ventricle	heart
10	chr21:16495000-16499400	Weak transcription	Pancreas	Pancrea
11	chr21:16495000-16499400	Weak transcription	Right Atrium	heart
12	chr21:16495000-16500600	Weak transcription	Stomach Mucosa	stomach
13	chr21:16495200-16498600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr21:16495200-16498600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr21:16495200-16499200	Weak transcription	Colon Smooth Muscle	Colon
16	chr21:16495200-16499200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr21:16495200-16499400	Weak transcription	Liver	Liver
18	chr21:16495200-16499400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr21:16495400-16499400	Weak transcription	Fetal Muscle Leg	muscle
20	chr21:16495600-16499200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr21:16496400-16497400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr21:16496600-16497400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr21:16496600-16498600	Weak transcription	Psoas Muscle	Psoas
24	chr21:16497000-16497400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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