Variant report

Variant	rs1073160
Chromosome Location	chr12:9058562-9058563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1073159	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842537	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11047953	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11048195	0.83[JPT][hapmap]
rs11048338	0.91[MEX][hapmap]
rs11048434	0.83[MEX][hapmap]
rs1124402	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11611106	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11613242	0.97[ASN][1000 genomes]
rs11613650	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11614970	0.84[ASN][1000 genomes]
rs12814670	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12815310	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12821842	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs12823100	0.81[CEU][hapmap]
rs1476911	0.87[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs1805721	0.80[GIH][hapmap];0.91[MEX][hapmap]
rs1805723	0.80[GIH][hapmap];0.87[MEX][hapmap]
rs1805724	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs1805732	0.87[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs1805733	0.87[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs1805736	0.89[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap]
rs1805745	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805761	0.87[GIH][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs1805765	0.87[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs1805784	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2110193	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2159961	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4309200	0.81[GIH][hapmap];0.91[MEX][hapmap]
rs6487462	0.89[ASN][1000 genomes]
rs6832	0.81[CEU][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap]
rs7299653	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7303776	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7306161	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7306165	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7311483	0.92[ASN][1000 genomes]
rs7311561	0.94[ASN][1000 genomes]
rs933462	0.81[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1073160	A2M	cis	parietal	SCAN
rs1073160	M6PR	cis	cerebellum	SCAN
rs1073160	ACRBP	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:9056200-9060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:9056600-9059200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:9056600-9059400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:9056800-9059000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:9057200-9060200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:9057600-9058800	Enhancers	Rectal Smooth Muscle	rectum
9	chr12:9057800-9058800	Enhancers	Fetal Muscle Leg	muscle
10	chr12:9058200-9058600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr12:9058200-9058600	Active TSS	Stomach Smooth Muscle	stomach
12	chr12:9058200-9058800	Enhancers	Placenta	Placenta
13	chr12:9058200-9059600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:9058200-9060600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr12:9058400-9058600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:9058400-9058800	Flanking Active TSS	Fetal Heart	heart
17	chr12:9058400-9059000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr12:9058400-9059200	Enhancers	HUES48 Cell Line	embryonic stem cell

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