Variant report

Variant	rs11613650
Chromosome Location	chr12:9060396-9060397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9059799..9061656-chr12:9066369..9069364,2	K562	blood:
2	chr12:9060156..9062965-chr12:9065487..9067869,2	K562	blood:

Variant related genes	Relation type
ENSG00000111752	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1049925	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1073159	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1073160	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10842537	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11047953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11048023	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11048190	0.83[EUR][1000 genomes]
rs11048195	0.83[EUR][1000 genomes]
rs11048264	0.82[EUR][1000 genomes]
rs11048337	0.82[EUR][1000 genomes]
rs11048338	0.81[EUR][1000 genomes]
rs11048344	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11048345	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1124402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11611106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613242	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11614970	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12371786	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12422905	0.81[EUR][1000 genomes]
rs12423746	0.82[EUR][1000 genomes]
rs12423817	0.83[EUR][1000 genomes]
rs12424026	0.82[EUR][1000 genomes]
rs12812913	0.83[EUR][1000 genomes]
rs12814670	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815310	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821842	0.83[EUR][1000 genomes]
rs12823100	0.83[EUR][1000 genomes]
rs12833375	0.81[EUR][1000 genomes]
rs1476911	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805724	0.83[EUR][1000 genomes]
rs1805732	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805733	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1805736	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1805737	0.89[EUR][1000 genomes]
rs1805745	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1805761	0.85[EUR][1000 genomes]
rs1805765	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1805784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2041624	0.83[EUR][1000 genomes]
rs2041625	0.82[EUR][1000 genomes]
rs2110193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159961	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377672	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2377673	0.82[EUR][1000 genomes]
rs2377674	0.82[EUR][1000 genomes]
rs34798934	0.83[EUR][1000 genomes]
rs4309200	0.82[EUR][1000 genomes]
rs6487462	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7299653	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7300767	0.82[EUR][1000 genomes]
rs7301381	0.82[EUR][1000 genomes]
rs7302417	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7303776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7306161	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7306165	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7309922	0.82[EUR][1000 genomes]
rs7311483	0.93[ASN][1000 genomes]
rs7311561	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7315055	0.80[EUR][1000 genomes]
rs7957321	0.82[EUR][1000 genomes]
rs933462	0.82[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:9056200-9060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:9058200-9060600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr12:9058600-9063600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:9058800-9060400	Enhancers	Fetal Heart	heart
7	chr12:9058800-9065400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:9059000-9060400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:9059000-9062400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr12:9059200-9060600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr12:9059400-9060400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr12:9059400-9060400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:9059400-9060400	Enhancers	Fetal Lung	lung
14	chr12:9059400-9064200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:9059600-9060600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:9059800-9060400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:9059800-9060400	Enhancers	Fetal Muscle Leg	muscle
18	chr12:9059800-9065200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:9060000-9060600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr12:9060000-9061200	Weak transcription	Colon Smooth Muscle	Colon
21	chr12:9060000-9064200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr12:9060000-9064600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:9060200-9060400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr12:9060200-9060400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr12:9060200-9060400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr12:9060200-9060400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:9060200-9060400	Enhancers	Fetal Thymus	thymus
28	chr12:9060200-9060800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr12:9060200-9061400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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