Variant report

Variant	rs1073159
Chromosome Location	chr12:9058218-9058219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9055426..9058402-chr12:9064622..9066964,2	K562	blood:

Variant related genes	Relation type
ENSG00000111752	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1049925	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1073160	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842537	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11047953	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11048023	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11048190	0.82[EUR][1000 genomes]
rs11048195	0.82[EUR][1000 genomes]
rs11048264	0.80[EUR][1000 genomes]
rs11048337	0.80[EUR][1000 genomes]
rs11048344	0.80[EUR][1000 genomes]
rs11048345	0.80[EUR][1000 genomes]
rs1124402	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11611106	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11613242	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11613650	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11614970	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12371786	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12423746	0.80[EUR][1000 genomes]
rs12423817	0.82[EUR][1000 genomes]
rs12424026	0.81[EUR][1000 genomes]
rs12812913	0.82[EUR][1000 genomes]
rs12814670	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12815310	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12821842	0.82[EUR][1000 genomes]
rs12823100	0.82[EUR][1000 genomes]
rs1476911	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1805724	0.82[EUR][1000 genomes]
rs1805732	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1805733	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1805736	0.89[EUR][1000 genomes]
rs1805737	0.87[EUR][1000 genomes]
rs1805745	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805761	0.84[EUR][1000 genomes]
rs1805765	0.84[EUR][1000 genomes]
rs1805784	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2041624	0.82[EUR][1000 genomes]
rs2041625	0.80[EUR][1000 genomes]
rs2110193	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2159961	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2377672	0.80[EUR][1000 genomes]
rs2377673	0.80[EUR][1000 genomes]
rs2377674	0.80[EUR][1000 genomes]
rs34798934	0.81[EUR][1000 genomes]
rs4309200	0.80[EUR][1000 genomes]
rs6487462	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7299653	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300767	0.80[EUR][1000 genomes]
rs7301381	0.80[EUR][1000 genomes]
rs7302417	0.86[EUR][1000 genomes]
rs7303776	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7306161	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7306165	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7309922	0.81[EUR][1000 genomes]
rs7311483	0.93[ASN][1000 genomes]
rs7311561	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7957321	0.80[EUR][1000 genomes]
rs933462	0.80[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:9056200-9060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:9056400-9058400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:9056600-9059200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:9056600-9059400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:9056800-9059000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:9057200-9060200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:9057600-9058400	Enhancers	Fetal Heart	heart
10	chr12:9057600-9058800	Enhancers	Rectal Smooth Muscle	rectum
11	chr12:9057800-9058800	Enhancers	Fetal Muscle Leg	muscle
12	chr12:9058200-9058400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:9058200-9058600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:9058200-9058600	Active TSS	Stomach Smooth Muscle	stomach
15	chr12:9058200-9058800	Enhancers	Placenta	Placenta
16	chr12:9058200-9059600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr12:9058200-9060600	Enhancers	H1 Cell Line	embryonic stem cell

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