Variant report

Variant	rs11614970
Chromosome Location	chr12:9060053-9060054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9059799..9061656-chr12:9066369..9069364,2	K562	blood:

Variant related genes	Relation type
ENSG00000111752	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1073159	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1073160	0.84[ASN][1000 genomes]
rs10842537	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11047953	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11048023	0.83[EUR][1000 genomes]
rs1124402	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11611106	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11613242	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11613650	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12814670	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12815310	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805736	0.80[EUR][1000 genomes]
rs1805745	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1805784	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2110193	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2159961	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6487462	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7299653	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7303776	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7306161	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7306165	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7311561	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:9056200-9060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:9057200-9060200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:9058200-9060600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr12:9058600-9063600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:9058800-9060400	Enhancers	Fetal Heart	heart
8	chr12:9058800-9065400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:9059000-9060400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr12:9059000-9062400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr12:9059200-9060200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr12:9059200-9060600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr12:9059400-9060200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr12:9059400-9060400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr12:9059400-9060400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:9059400-9060400	Enhancers	Fetal Lung	lung
17	chr12:9059400-9064200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:9059600-9060600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr12:9059800-9060200	Active TSS	Stomach Smooth Muscle	stomach
20	chr12:9059800-9060400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr12:9059800-9060400	Enhancers	Fetal Muscle Leg	muscle
22	chr12:9059800-9065200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr12:9060000-9060200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr12:9060000-9060200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr12:9060000-9060200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr12:9060000-9060600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr12:9060000-9061200	Weak transcription	Colon Smooth Muscle	Colon
28	chr12:9060000-9064200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr12:9060000-9064600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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