Variant report

Variant	rs7303776
Chromosome Location	chr12:9061264-9061265
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9059799..9061656-chr12:9066369..9069364,2	K562	blood:
2	chr12:9060156..9062965-chr12:9065487..9067869,2	K562	blood:

Variant related genes	Relation type
ENSG00000111752	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1049925	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1073159	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1073160	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10842537	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11047953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11048023	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11048190	0.83[EUR][1000 genomes]
rs11048195	0.83[EUR][1000 genomes]
rs11048264	0.82[EUR][1000 genomes]
rs11048337	0.82[EUR][1000 genomes]
rs11048338	0.81[EUR][1000 genomes]
rs11048344	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11048345	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1124402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11611106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11613242	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11613650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11614970	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12371786	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12422905	0.81[EUR][1000 genomes]
rs12423746	0.82[EUR][1000 genomes]
rs12423817	0.83[EUR][1000 genomes]
rs12424026	0.82[EUR][1000 genomes]
rs12812913	0.83[EUR][1000 genomes]
rs12814670	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12815310	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12821842	0.83[EUR][1000 genomes]
rs12823100	0.83[EUR][1000 genomes]
rs12833375	0.81[EUR][1000 genomes]
rs1476911	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805724	0.83[EUR][1000 genomes]
rs1805732	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805733	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1805736	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1805737	0.89[EUR][1000 genomes]
rs1805745	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1805761	0.85[EUR][1000 genomes]
rs1805765	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1805784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2041624	0.83[EUR][1000 genomes]
rs2041625	0.82[EUR][1000 genomes]
rs2110193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2159961	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2377672	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2377673	0.82[EUR][1000 genomes]
rs2377674	0.82[EUR][1000 genomes]
rs34798934	0.83[EUR][1000 genomes]
rs4309200	0.82[EUR][1000 genomes]
rs6487462	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7299653	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7300767	0.82[EUR][1000 genomes]
rs7301381	0.82[EUR][1000 genomes]
rs7302417	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7306161	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7306165	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7309922	0.82[EUR][1000 genomes]
rs7311483	0.91[ASN][1000 genomes]
rs7311561	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7315055	0.80[EUR][1000 genomes]
rs7957321	0.82[EUR][1000 genomes]
rs933462	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386458	chr12:9060907-9061418	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9058600-9063600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:9058800-9065400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr12:9059000-9062400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:9059400-9064200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:9059800-9065200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:9060000-9064200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:9060000-9064600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:9060200-9061400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:9060400-9061600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:9060400-9062400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:9060400-9062400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr12:9060400-9062400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:9060400-9062400	Weak transcription	Fetal Heart	heart
15	chr12:9060400-9062600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:9060400-9062600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:9060400-9064000	Weak transcription	Fetal Lung	lung
18	chr12:9060400-9064200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr12:9060400-9065600	Weak transcription	Fetal Muscle Leg	muscle
20	chr12:9060400-9065600	Weak transcription	Fetal Thymus	thymus
21	chr12:9060400-9066000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:9060600-9061400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr12:9060600-9061400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr12:9060600-9062400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:9060600-9065600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:9060800-9062600	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links