Variant report

Variant	rs1124402
Chromosome Location	chr12:9062606-9062607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:9062237-9062682	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9060156..9062965-chr12:9065487..9067869,2	K562	blood:

Variant related genes	Relation type
PHC1	TF binding region
ENSG00000111752	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1049925	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1073159	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1073160	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10842537	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11047953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11048023	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11048190	0.83[EUR][1000 genomes]
rs11048195	0.83[EUR][1000 genomes]
rs11048264	0.82[EUR][1000 genomes]
rs11048337	0.82[EUR][1000 genomes]
rs11048338	0.81[EUR][1000 genomes]
rs11048344	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11048345	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11611106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11613242	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11613650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11614970	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12371786	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12422905	0.81[EUR][1000 genomes]
rs12423746	0.82[EUR][1000 genomes]
rs12423817	0.83[EUR][1000 genomes]
rs12424026	0.82[EUR][1000 genomes]
rs12812913	0.83[EUR][1000 genomes]
rs12814670	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12815310	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12821842	0.83[EUR][1000 genomes]
rs12823100	0.83[EUR][1000 genomes]
rs12833375	0.81[EUR][1000 genomes]
rs1476911	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805724	0.83[EUR][1000 genomes]
rs1805732	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805733	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1805736	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1805737	0.89[EUR][1000 genomes]
rs1805745	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805761	0.85[EUR][1000 genomes]
rs1805765	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1805784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2041624	0.83[EUR][1000 genomes]
rs2041625	0.82[EUR][1000 genomes]
rs2110193	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159961	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2377672	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2377673	0.82[EUR][1000 genomes]
rs2377674	0.82[EUR][1000 genomes]
rs34798934	0.83[EUR][1000 genomes]
rs4309200	0.82[EUR][1000 genomes]
rs6487462	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7299653	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7300767	0.82[EUR][1000 genomes]
rs7301381	0.82[EUR][1000 genomes]
rs7302417	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7303776	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7306161	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7306165	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7309922	0.82[EUR][1000 genomes]
rs7311483	0.84[ASN][1000 genomes]
rs7311561	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7315055	0.80[EUR][1000 genomes]
rs7957321	0.82[EUR][1000 genomes]
rs933462	0.82[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9058600-9063600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:9058800-9065400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr12:9059400-9064200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:9059800-9065200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:9060000-9064200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:9060000-9064600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:9060400-9064000	Weak transcription	Fetal Lung	lung
9	chr12:9060400-9064200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr12:9060400-9065600	Weak transcription	Fetal Muscle Leg	muscle
11	chr12:9060400-9065600	Weak transcription	Fetal Thymus	thymus
12	chr12:9060400-9066000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:9060600-9065600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:9061400-9064200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr12:9062000-9064600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:9062400-9062800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:9062400-9063600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr12:9062400-9063600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr12:9062400-9063600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr12:9062400-9063600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr12:9062400-9063800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr12:9062400-9064000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr12:9062400-9065600	Enhancers	Fetal Heart	heart
24	chr12:9062600-9063400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr12:9062600-9063600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr12:9062600-9063800	Enhancers	H9 Cell Line	embryonic stem cell
27	chr12:9062600-9066000	Weak transcription	Right Ventricle	heart

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