Variant report

Variant	rs11048023
Chromosome Location	chr12:9074702-9074703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1049925	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1073159	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10842537	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11047953	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11048190	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11048195	0.88[EUR][1000 genomes]
rs11048264	0.86[EUR][1000 genomes]
rs11048337	0.86[EUR][1000 genomes]
rs11048338	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11048344	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11048345	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1124402	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11611106	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11613242	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11613650	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11614970	0.83[EUR][1000 genomes]
rs12371786	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12422905	0.86[EUR][1000 genomes]
rs12423746	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12423817	0.88[EUR][1000 genomes]
rs12424026	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12812913	0.88[EUR][1000 genomes]
rs12814670	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12815310	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12821842	0.88[EUR][1000 genomes]
rs12823100	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12833375	0.86[EUR][1000 genomes]
rs1476911	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1805724	0.88[EUR][1000 genomes]
rs1805732	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1805733	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1805735	0.81[ASN][1000 genomes]
rs1805736	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1805737	0.93[EUR][1000 genomes]
rs1805745	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1805761	0.90[EUR][1000 genomes]
rs1805765	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1805784	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2041624	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2041625	0.86[EUR][1000 genomes]
rs2110193	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2159961	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2377672	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2377673	0.86[EUR][1000 genomes]
rs2377674	0.86[EUR][1000 genomes]
rs34798934	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4309200	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7299653	0.90[EUR][1000 genomes]
rs7300767	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7301381	0.86[EUR][1000 genomes]
rs7302417	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7303776	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7306161	0.91[EUR][1000 genomes]
rs7306165	0.90[EUR][1000 genomes]
rs7309922	0.87[EUR][1000 genomes]
rs7311561	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7315055	0.85[EUR][1000 genomes]
rs7957321	0.86[EUR][1000 genomes]
rs933462	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11048023	KLRG1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9068200-9074800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:9068200-9075000	Weak transcription	Pancreas	Pancrea
3	chr12:9068200-9079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:9068200-9084000	Weak transcription	Esophagus	oesophagus
5	chr12:9068200-9086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:9068200-9088800	Weak transcription	Gastric	stomach
7	chr12:9068200-9091400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr12:9068200-9094200	Weak transcription	Colonic Mucosa	Colon
9	chr12:9068200-9094200	Weak transcription	Lung	lung
10	chr12:9068200-9094200	Weak transcription	Psoas Muscle	Psoas
11	chr12:9068200-9094200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:9068200-9094200	Weak transcription	Small Intestine	intestine
13	chr12:9068200-9100000	Weak transcription	Stomach Mucosa	stomach
14	chr12:9068400-9075000	Weak transcription	HSMMtube	muscle
15	chr12:9068400-9075400	Weak transcription	A549	lung
16	chr12:9068600-9081200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:9068800-9081200	Weak transcription	NHDF-Ad	bronchial
18	chr12:9068800-9081600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr12:9068800-9084400	Weak transcription	Osteobl	bone
20	chr12:9068800-9086400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr12:9069000-9079600	Weak transcription	Fetal Brain Male	brain
22	chr12:9069000-9086400	Weak transcription	HepG2	liver
23	chr12:9069000-9094200	Weak transcription	NHLF	lung
24	chr12:9069400-9094000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr12:9069400-9094200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr12:9069600-9084400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr12:9069600-9092000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr12:9069800-9075000	Weak transcription	Fetal Heart	heart
29	chr12:9069800-9082400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:9069800-9083600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr12:9069800-9083800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr12:9070200-9076000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:9070400-9075800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr12:9070400-9078000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr12:9070400-9078800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:9070400-9079000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr12:9070400-9079600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr12:9070400-9083400	Weak transcription	K562	blood
39	chr12:9070400-9092000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr12:9070400-9092000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr12:9070600-9075800	Strong transcription	Placenta	Placenta
42	chr12:9070600-9078200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
43	chr12:9070600-9078200	Strong transcription	Fetal Thymus	thymus
44	chr12:9070600-9092000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr12:9070600-9092600	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:9070600-9092600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr12:9071000-9075600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr12:9071000-9075600	Strong transcription	Fetal Stomach	stomach
49	chr12:9071000-9076000	Strong transcription	Colon Smooth Muscle	Colon
50	chr12:9071000-9076200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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