Variant report

Variant	rs7306161
Chromosome Location	chr12:9059075-9059076
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1049925	0.80[EUR][1000 genomes]
rs1073159	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1073160	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10842537	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11047953	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11048023	0.91[EUR][1000 genomes]
rs1124402	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11611106	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11613242	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11613650	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11614970	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12371786	0.84[EUR][1000 genomes]
rs12814670	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12815310	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1476911	0.84[EUR][1000 genomes]
rs1805732	0.84[EUR][1000 genomes]
rs1805733	0.86[EUR][1000 genomes]
rs1805736	0.87[EUR][1000 genomes]
rs1805737	0.85[EUR][1000 genomes]
rs1805745	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1805761	0.82[EUR][1000 genomes]
rs1805765	0.82[EUR][1000 genomes]
rs1805784	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2110193	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2159961	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6487462	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7299653	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7302417	0.84[EUR][1000 genomes]
rs7303776	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7306165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311483	0.87[ASN][1000 genomes]
rs7311561	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7306161	PHC1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:9056200-9060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:9056600-9059200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:9056600-9059400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:9057200-9060200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:9058200-9059600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:9058200-9060600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr12:9058400-9059200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr12:9058600-9063600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:9058800-9059200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:9058800-9059400	Weak transcription	Fetal Lung	lung
13	chr12:9058800-9059800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:9058800-9059800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:9058800-9059800	Weak transcription	Fetal Muscle Leg	muscle
16	chr12:9058800-9060000	Enhancers	Colon Smooth Muscle	Colon
17	chr12:9058800-9060400	Enhancers	Fetal Heart	heart
18	chr12:9058800-9065400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr12:9059000-9059200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr12:9059000-9059200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr12:9059000-9059200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:9059000-9059400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:9059000-9059600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:9059000-9059800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:9059000-9060400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr12:9059000-9062400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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