Variant report

Variant	rs10737502
Chromosome Location	chr1:161792321-161792322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161784877..161787904-chr1:161789493..161792742,3	K562	blood:
2	chr1:161773345..161775131-chr1:161792112..161794630,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10733044	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10753645	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10753666	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10800068	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1394070	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1553444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1806594	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2055539	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2134690	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2134696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298019	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341468	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2341479	0.90[ASN][1000 genomes]
rs2499855	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2499856	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2880055	0.90[ASN][1000 genomes]
rs34312480	0.90[ASN][1000 genomes]
rs34461550	1.00[ASN][1000 genomes]
rs35621393	0.97[ASN][1000 genomes]
rs36080602	0.90[ASN][1000 genomes]
rs3767633	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233380	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4300199	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4579731	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656335	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4656339	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4657103	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427633	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6427639	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6667896	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6685369	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698065	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6701754	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71639910	0.89[ASN][1000 genomes]
rs7517386	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7532448	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs924777	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161738600-161794000	Weak transcription	Pancreas	Pancrea
2	chr1:161738600-161795600	Weak transcription	Gastric	stomach
3	chr1:161753400-161800600	Weak transcription	Spleen	Spleen
4	chr1:161755000-161793600	Weak transcription	Colonic Mucosa	Colon
5	chr1:161757400-161797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:161762400-161795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:161762800-161797600	Weak transcription	HMEC	breast
8	chr1:161763000-161797400	Weak transcription	NHLF	lung
9	chr1:161773400-161797200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:161773400-161854400	Weak transcription	Small Intestine	intestine
11	chr1:161775800-161794800	Weak transcription	Fetal Stomach	stomach
12	chr1:161780200-161797200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:161780400-161795000	Weak transcription	Esophagus	oesophagus
14	chr1:161780400-161795000	Weak transcription	Left Ventricle	heart
15	chr1:161780400-161798800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr1:161780400-161824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:161780600-161798800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr1:161780600-161808200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:161780600-161823400	Weak transcription	A549	lung
20	chr1:161780600-161836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:161780800-161795000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:161780800-161795200	Weak transcription	Brain Germinal Matrix	brain
23	chr1:161780800-161795600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:161780800-161797600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:161780800-161798200	Weak transcription	Psoas Muscle	Psoas
26	chr1:161780800-161812400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:161780800-161823000	Weak transcription	HSMMtube	muscle
28	chr1:161780800-161825800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:161780800-161834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:161781000-161823000	Weak transcription	Fetal Kidney	kidney
31	chr1:161781200-161796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:161781400-161801000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:161783200-161795400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr1:161785400-161822400	Weak transcription	Fetal Intestine Small	intestine
35	chr1:161786000-161797000	Weak transcription	Osteobl	bone
36	chr1:161786800-161797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:161786800-161797200	Weak transcription	Hela-S3	cervix
38	chr1:161787400-161804600	Weak transcription	NHDF-Ad	bronchial
39	chr1:161787600-161797000	Weak transcription	Fetal Heart	heart
40	chr1:161787600-161809800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:161787600-161821000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:161788000-161792800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:161788600-161795000	Weak transcription	Stomach Mucosa	stomach
44	chr1:161788800-161796400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:161789200-161795200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr1:161789400-161792600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr1:161789400-161792800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr1:161789400-161792800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr1:161789400-161794400	Strong transcription	Adipose Nuclei	Adipose
50	chr1:161789400-161795600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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