Variant report

Variant	rs6698065
Chromosome Location	chr1:161891528-161891529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161890894..161893864-chr1:161898012..161900548,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10733044	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10737502	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10753645	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10753666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10799979	0.83[YRI][hapmap]
rs10800068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394070	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1553444	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16846343	0.86[YRI][hapmap]
rs16852678	0.86[YRI][hapmap]
rs1806594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2134690	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2134696	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2298019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2341468	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2341479	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2499855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2499856	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880055	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34312480	1.00[ASN][1000 genomes]
rs34461550	0.90[ASN][1000 genomes]
rs35621393	0.94[ASN][1000 genomes]
rs36080602	1.00[ASN][1000 genomes]
rs3767633	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4233380	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4300199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4579731	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4656335	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4656339	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6427633	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667896	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6685369	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6701754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs71639910	0.98[ASN][1000 genomes]
rs7517386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532448	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs924777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv464206	chr1:161798239-162067447	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv470744	chr1:161798239-162067447	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv548077	chr1:161798239-162067447	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3440913	chr1:161864485-161897210	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3353497	chr1:161864505-161897180	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161824200-161928400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:161861600-161906400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:161861600-161936000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:161880000-161891600	Weak transcription	Fetal Stomach	stomach
5	chr1:161880600-161892000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:161881600-161898800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:161881600-161912000	Weak transcription	Aorta	Aorta
8	chr1:161883000-161898600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:161883200-161916000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:161883400-161896200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:161883400-161928200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:161884200-161910800	Weak transcription	HepG2	liver
13	chr1:161884400-161896000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:161884600-161927600	Weak transcription	NHEK	skin
15	chr1:161884800-161922600	Weak transcription	Brain Anterior Caudate	brain
16	chr1:161885000-161910600	Weak transcription	Gastric	stomach
17	chr1:161885000-161914400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:161885000-161928000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:161885200-161891600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:161885200-161891600	Weak transcription	HUVEC	blood vessel
21	chr1:161885200-161903600	Weak transcription	Thymus	Thymus
22	chr1:161885200-161911800	Weak transcription	Left Ventricle	heart
23	chr1:161885400-161896000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:161885400-161903600	Weak transcription	Fetal Thymus	thymus
25	chr1:161885400-161906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:161885600-161893000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:161885600-161896200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:161885600-161899000	Weak transcription	Ovary	ovary
29	chr1:161885600-161905000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:161885800-161919200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:161886000-161892000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:161886000-161892400	Weak transcription	Liver	Liver
33	chr1:161886000-161895200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr1:161886000-161905800	Weak transcription	Adipose Nuclei	Adipose
35	chr1:161886000-161910600	Weak transcription	K562	blood
36	chr1:161886000-161911600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr1:161886000-161911800	Weak transcription	Placenta	Placenta
38	chr1:161886000-161912000	Weak transcription	Lung	lung
39	chr1:161886000-161912000	Weak transcription	Pancreas	Pancrea
40	chr1:161886200-161912000	Weak transcription	Fetal Intestine Large	intestine
41	chr1:161887000-161918600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr1:161887000-161928200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr1:161887200-161891600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:161887200-161893400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr1:161887200-161895400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:161887200-161903400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr1:161887200-161906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:161887200-161914200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr1:161887200-161915600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:161887200-161929600	Weak transcription	Hela-S3	cervix

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