Variant report

Variant	rs6701754
Chromosome Location	chr1:161771285-161771286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161770427..161772901-chr1:161774047..161776323,2	MCF-7	breast:
2	chr1:161768961..161773508-chr1:161774562..161778205,4	K562	blood:
3	chr1:161736028..161737588-chr1:161769956..161771679,2	K562	blood:
4	chr1:161771151..161773620-chr1:161774847..161776927,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118217	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10733044	0.90[ASN][1000 genomes]
rs10737502	1.00[ASN][1000 genomes]
rs10753645	0.97[ASN][1000 genomes]
rs10753666	0.90[ASN][1000 genomes]
rs10800068	0.90[ASN][1000 genomes]
rs12756470	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1394070	0.97[ASN][1000 genomes]
rs1553444	0.97[ASN][1000 genomes]
rs1806594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2055539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2134690	1.00[ASN][1000 genomes]
rs2134696	1.00[ASN][1000 genomes]
rs2298019	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2341468	0.89[ASN][1000 genomes]
rs2341479	0.90[ASN][1000 genomes]
rs2499855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2499856	0.90[ASN][1000 genomes]
rs2880055	0.90[ASN][1000 genomes]
rs34312480	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34461550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35699192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36080602	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3767633	0.97[ASN][1000 genomes]
rs4233380	0.90[ASN][1000 genomes]
rs4300199	0.90[ASN][1000 genomes]
rs4579731	1.00[ASN][1000 genomes]
rs4656335	0.97[ASN][1000 genomes]
rs4656339	0.90[ASN][1000 genomes]
rs4657103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6427633	0.90[ASN][1000 genomes]
rs6427639	0.90[ASN][1000 genomes]
rs6667896	0.94[ASN][1000 genomes]
rs6685369	1.00[ASN][1000 genomes]
rs6698065	0.90[ASN][1000 genomes]
rs71634908	0.86[EUR][1000 genomes]
rs71639904	1.00[AMR][1000 genomes]
rs71639910	0.89[ASN][1000 genomes]
rs7517386	0.90[ASN][1000 genomes]
rs7532448	0.89[ASN][1000 genomes]
rs924777	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161737200-161775200	Weak transcription	Fetal Stomach	stomach
2	chr1:161737200-161775800	Weak transcription	Stomach Mucosa	stomach
3	chr1:161737200-161780000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:161738600-161794000	Weak transcription	Pancreas	Pancrea
5	chr1:161738600-161795600	Weak transcription	Gastric	stomach
6	chr1:161742400-161773000	Weak transcription	Small Intestine	intestine
7	chr1:161745400-161780000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:161747600-161773800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:161748000-161778800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr1:161748200-161780000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:161749000-161777000	Strong transcription	Liver	Liver
12	chr1:161749200-161780000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr1:161750600-161774800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:161751800-161773800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:161752200-161773400	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr1:161752200-161780000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:161752600-161776000	Weak transcription	Fetal Heart	heart
18	chr1:161753000-161771800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:161753200-161780000	Weak transcription	Esophagus	oesophagus
20	chr1:161753400-161800600	Weak transcription	Spleen	Spleen
21	chr1:161755000-161793600	Weak transcription	Colonic Mucosa	Colon
22	chr1:161755400-161780000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:161756200-161776800	Strong transcription	Primary B cells from cord blood	blood
24	chr1:161757400-161778400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:161757400-161797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:161759200-161773600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:161759200-161773800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:161759400-161773400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:161759600-161773200	Strong transcription	Adipose Nuclei	Adipose
30	chr1:161759600-161773800	Strong transcription	Primary T cells from cord blood	blood
31	chr1:161759600-161777400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr1:161760200-161773600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr1:161760400-161772600	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:161760400-161780200	Weak transcription	A549	lung
35	chr1:161760800-161777200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr1:161761000-161771600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr1:161761200-161773400	Strong transcription	Fetal Thymus	thymus
38	chr1:161761200-161774400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr1:161761200-161774600	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr1:161762200-161776000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:161762200-161779800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:161762200-161780000	Weak transcription	Thymus	Thymus
43	chr1:161762200-161790600	Weak transcription	Fetal Brain Male	brain
44	chr1:161762400-161779800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:161762400-161790800	Weak transcription	NH-A	brain
46	chr1:161762400-161791200	Weak transcription	Right Ventricle	heart
47	chr1:161762400-161795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr1:161762600-161771600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:161762800-161771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr1:161762800-161797600	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links