Variant report

Variant	rs10780551
Chromosome Location	chr9:72278703-72278704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1030144	0.81[ASN][1000 genomes]
rs10867853	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10867859	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10867877	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11139605	0.87[ASN][1000 genomes]
rs12005898	0.87[ASN][1000 genomes]
rs1330337	1.00[ASN][1000 genomes]
rs2309517	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4629937	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744576	0.94[EUR][1000 genomes]
rs4744928	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4744932	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56401736	1.00[ASN][1000 genomes]
rs57202225	0.87[ASN][1000 genomes]
rs57337824	0.87[ASN][1000 genomes]
rs6559671	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68150206	0.87[ASN][1000 genomes]
rs72719102	0.87[ASN][1000 genomes]
rs7868291	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72253000-72285000	Weak transcription	Fetal Brain Female	brain
2	chr9:72260600-72286200	Weak transcription	Aorta	Aorta
3	chr9:72262600-72285400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:72273000-72285600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:72273800-72282600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:72274600-72280000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:72274600-72282000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:72274600-72282200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:72274800-72278800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:72275400-72278800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:72275400-72278800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:72275800-72285400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:72276000-72283600	Weak transcription	Liver	Liver
14	chr9:72276200-72282400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:72276200-72285400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:72277400-72286200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:72278400-72285400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:72278600-72278800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:72278600-72279200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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