Variant report

Variant	rs68150206
Chromosome Location	chr9:72276125-72276126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72271323..72273681-chr9:72274273..72277521,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10780551	0.87[ASN][1000 genomes]
rs10867853	0.82[ASN][1000 genomes]
rs10867859	1.00[ASN][1000 genomes]
rs11139605	1.00[ASN][1000 genomes]
rs12005898	1.00[ASN][1000 genomes]
rs12376278	0.87[ASN][1000 genomes]
rs1330337	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4629937	0.87[ASN][1000 genomes]
rs4744576	0.82[ASN][1000 genomes]
rs4744930	0.83[EUR][1000 genomes]
rs4744931	0.87[EUR][1000 genomes]
rs56165701	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56401736	0.87[ASN][1000 genomes]
rs57202225	1.00[ASN][1000 genomes]
rs57337824	1.00[ASN][1000 genomes]
rs6559671	1.00[ASN][1000 genomes]
rs72719096	0.87[ASN][1000 genomes]
rs72719102	1.00[ASN][1000 genomes]
rs7851932	0.87[ASN][1000 genomes]
rs7868291	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72253000-72285000	Weak transcription	Fetal Brain Female	brain
2	chr9:72260600-72286200	Weak transcription	Aorta	Aorta
3	chr9:72262600-72285400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:72272200-72276400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:72273000-72285600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:72273800-72282600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:72274600-72278000	Weak transcription	Brain Angular Gyrus	brain
8	chr9:72274600-72280000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:72274600-72282000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:72274600-72282200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:72274800-72278800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:72275000-72276600	Enhancers	HUVEC	blood vessel
13	chr9:72275400-72276400	Weak transcription	Ovary	ovary
14	chr9:72275400-72278800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:72275400-72278800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:72275600-72276400	Enhancers	Brain Hippocampus Middle	brain
17	chr9:72275800-72276200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:72275800-72278600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:72275800-72285400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:72276000-72276200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:72276000-72276800	Enhancers	Fetal Kidney	kidney
22	chr9:72276000-72283600	Weak transcription	Liver	Liver

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