Variant report

Variant	rs6559671
Chromosome Location	chr9:72265367-72265368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10780551	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10867853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10867859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867877	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs11139605	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12005898	1.00[ASN][1000 genomes]
rs12376278	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1330337	0.87[ASN][1000 genomes]
rs2309517	0.92[EUR][1000 genomes]
rs4629937	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744576	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744928	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744932	0.88[EUR][1000 genomes]
rs56401736	0.87[ASN][1000 genomes]
rs57202225	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57337824	1.00[ASN][1000 genomes]
rs68150206	1.00[ASN][1000 genomes]
rs7020412	1.00[CHB][hapmap]
rs7033141	1.00[CHB][hapmap]
rs72719096	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72719102	1.00[ASN][1000 genomes]
rs7851932	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs7860931	1.00[CHB][hapmap]
rs7868291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72253000-72285000	Weak transcription	Fetal Brain Female	brain
2	chr9:72253400-72274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72258200-72274000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72260600-72286200	Weak transcription	Aorta	Aorta
5	chr9:72262200-72267400	Weak transcription	Brain Substantia Nigra	brain
6	chr9:72262400-72274200	Weak transcription	Brain Angular Gyrus	brain
7	chr9:72262600-72285400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:72262800-72275600	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:72263600-72266400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:72263800-72265400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:72264000-72265400	Enhancers	Osteobl	bone
12	chr9:72264000-72265600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:72264000-72265800	Enhancers	NHDF-Ad	bronchial
14	chr9:72264200-72265400	Enhancers	HSMM	muscle
15	chr9:72264200-72265600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:72264200-72265600	Enhancers	NHLF	lung
17	chr9:72264400-72265600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:72264400-72265600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:72264600-72266000	Enhancers	Fetal Lung	lung
20	chr9:72264600-72275200	Weak transcription	Fetal Stomach	stomach
21	chr9:72264800-72269000	Enhancers	Liver	Liver
22	chr9:72265000-72265600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:72265000-72265600	Enhancers	Fetal Kidney	kidney
24	chr9:72265200-72266000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:72265200-72268800	Weak transcription	Ovary	ovary

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