Variant report

Variant	rs11139605
Chromosome Location	chr9:72267956-72267957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72265675..72268152-chr9:72283798..72286751,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10780551	0.87[ASN][1000 genomes]
rs10867853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10867859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12005898	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376278	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1330337	0.87[ASN][1000 genomes]
rs4629937	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs4744576	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56401736	0.87[ASN][1000 genomes]
rs57202225	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57337824	1.00[ASN][1000 genomes]
rs6559671	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68150206	1.00[ASN][1000 genomes]
rs7020412	1.00[CHB][hapmap]
rs7033141	1.00[CHB][hapmap]
rs72719096	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72719102	1.00[ASN][1000 genomes]
rs7851932	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs7860931	1.00[CHB][hapmap]
rs7868291	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72253000-72285000	Weak transcription	Fetal Brain Female	brain
2	chr9:72253400-72274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72258200-72274000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72260600-72286200	Weak transcription	Aorta	Aorta
5	chr9:72262400-72274200	Weak transcription	Brain Angular Gyrus	brain
6	chr9:72262600-72285400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:72262800-72275600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:72264600-72275200	Weak transcription	Fetal Stomach	stomach
9	chr9:72264800-72269000	Enhancers	Liver	Liver
10	chr9:72265200-72268800	Weak transcription	Ovary	ovary
11	chr9:72265600-72268200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:72265600-72272800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:72266000-72273800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links