Variant report

Variant	rs7868291
Chromosome Location	chr9:72262481-72262482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72260035..72262855-chr9:72285615..72287876,2	MCF-7	breast:
2	chr9:72260891..72262906-chr9:72372522..72374744,2	MCF-7	breast:
3	chr9:72260330..72264322-chr9:72284288..72287596,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107282	Chromatin interaction
ENSG00000261447	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10780551	0.87[ASN][1000 genomes]
rs10867853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10867859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139605	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12005898	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1330337	0.87[ASN][1000 genomes]
rs4629937	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4744576	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56401736	0.87[ASN][1000 genomes]
rs57202225	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57337824	1.00[ASN][1000 genomes]
rs6559671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68150206	1.00[ASN][1000 genomes]
rs7020412	1.00[CHB][hapmap]
rs7033141	1.00[CHB][hapmap]
rs72719096	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72719102	1.00[ASN][1000 genomes]
rs7851932	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7860931	1.00[CHB][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72247400-72264200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:72253000-72285000	Weak transcription	Fetal Brain Female	brain
3	chr9:72253200-72264800	Weak transcription	NH-A	brain
4	chr9:72253400-72274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:72253600-72264200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:72255400-72264400	Weak transcription	Left Ventricle	heart
7	chr9:72256400-72265200	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:72257400-72264200	Weak transcription	Fetal Stomach	stomach
9	chr9:72258200-72274000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:72258600-72262800	Weak transcription	Ovary	ovary
11	chr9:72258600-72263400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:72259600-72262800	Enhancers	Brain Hippocampus Middle	brain
13	chr9:72259600-72263000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:72260200-72263200	Enhancers	Fetal Lung	lung
15	chr9:72260200-72265000	Weak transcription	Fetal Kidney	kidney
16	chr9:72260600-72263000	Enhancers	Brain Anterior Caudate	brain
17	chr9:72260600-72263600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:72260600-72286200	Weak transcription	Aorta	Aorta
19	chr9:72260800-72264000	Weak transcription	Osteobl	bone
20	chr9:72260800-72264800	Weak transcription	Liver	Liver
21	chr9:72261400-72262600	Enhancers	Brain Cingulate Gyrus	brain
22	chr9:72261400-72263000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:72261400-72264200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:72261600-72262600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:72261800-72264200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:72262000-72263800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:72262000-72264200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:72262200-72264200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:72262200-72267400	Weak transcription	Brain Substantia Nigra	brain
30	chr9:72262400-72264000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:72262400-72274200	Weak transcription	Brain Angular Gyrus	brain

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