Variant report

Variant	rs7033141
Chromosome Location	chr9:72226015-72226016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10867853	1.00[CHB][hapmap]
rs10867859	1.00[CHB][hapmap]
rs11139338	0.92[ASW][hapmap];0.85[LWK][hapmap];0.94[YRI][hapmap]
rs11139473	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11139605	1.00[CHB][hapmap]
rs12376278	1.00[CHB][hapmap]
rs4629937	1.00[CHB][hapmap]
rs6559643	0.85[ASW][hapmap];0.85[LWK][hapmap];0.94[YRI][hapmap]
rs6559671	1.00[CHB][hapmap]
rs7020412	1.00[CHB][hapmap]
rs7851932	1.00[CHB][hapmap]
rs7853648	1.00[CEU][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7860931	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7868291	1.00[CHB][hapmap]
rs7871895	1.00[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7033141	APBA1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72215600-72235200	Weak transcription	Aorta	Aorta
2	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
3	chr9:72221200-72237200	Weak transcription	Ovary	ovary
4	chr9:72224000-72226200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:72224600-72226200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:72225200-72226200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:72225400-72226200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:72225400-72226600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:72225400-72226600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:72225600-72226600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:72225800-72226400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr9:72225800-72226800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:72226000-72226400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:72226000-72226600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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