Variant report

Variant	rs4629937
Chromosome Location	chr9:72252915-72252916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72252636..72254161-chr9:72259279..72262052,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10780551	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10867853	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10867859	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10867877	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs11139605	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs12005898	0.87[ASN][1000 genomes]
rs12376278	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2309517	0.89[EUR][1000 genomes]
rs4744576	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4744928	0.90[EUR][1000 genomes]
rs4744932	0.86[EUR][1000 genomes]
rs57202225	0.87[ASN][1000 genomes]
rs57337824	0.87[ASN][1000 genomes]
rs6559671	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68150206	0.87[ASN][1000 genomes]
rs7020412	1.00[CHB][hapmap]
rs7033141	1.00[CHB][hapmap]
rs72719096	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719102	0.87[ASN][1000 genomes]
rs7851932	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7860931	1.00[CHB][hapmap]
rs7868291	1.00[CHB][hapmap];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4629937	KLF9	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72240400-72260200	Weak transcription	Brain Anterior Caudate	brain
2	chr9:72242200-72260200	Weak transcription	Fetal Lung	lung
3	chr9:72247400-72264200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:72248200-72253200	Weak transcription	Pancreas	Pancrea
5	chr9:72250200-72261400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:72252000-72253000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:72252000-72253000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:72252000-72253200	Enhancers	HUVEC	blood vessel
9	chr9:72252000-72254000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:72252000-72254400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:72252200-72253600	Enhancers	NHDF-Ad	bronchial
12	chr9:72252200-72254400	Enhancers	NHEK	skin
13	chr9:72252400-72253000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:72252400-72253000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:72252400-72253000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:72252400-72253200	Enhancers	Brain Cingulate Gyrus	brain
17	chr9:72252400-72253200	Enhancers	Brain Substantia Nigra	brain
18	chr9:72252400-72253200	Enhancers	HMEC	breast
19	chr9:72252400-72253200	Enhancers	NH-A	brain
20	chr9:72252400-72253200	Enhancers	Osteobl	bone
21	chr9:72252400-72253400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:72252400-72253600	Enhancers	Brain Hippocampus Middle	brain
23	chr9:72252400-72253600	Enhancers	HSMM	muscle
24	chr9:72252600-72253000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr9:72252600-72253200	Enhancers	Fetal Heart	heart
26	chr9:72252600-72253200	Enhancers	NHLF	lung
27	chr9:72252800-72253000	Enhancers	Brain Angular Gyrus	brain
28	chr9:72252800-72253600	Enhancers	Liver	Liver
29	chr9:72252800-72257600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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