Variant report

Variant	rs12005898
Chromosome Location	chr9:72271862-72271863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10780551	0.87[ASN][1000 genomes]
rs10867853	0.82[ASN][1000 genomes]
rs10867859	1.00[ASN][1000 genomes]
rs11139605	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376278	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1330337	0.87[ASN][1000 genomes]
rs4629937	0.87[ASN][1000 genomes]
rs4744576	0.82[ASN][1000 genomes]
rs56401736	0.87[ASN][1000 genomes]
rs57202225	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57337824	1.00[ASN][1000 genomes]
rs6559671	1.00[ASN][1000 genomes]
rs68150206	1.00[ASN][1000 genomes]
rs72719096	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72719102	1.00[ASN][1000 genomes]
rs7851932	0.87[ASN][1000 genomes]
rs7868291	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72253000-72285000	Weak transcription	Fetal Brain Female	brain
2	chr9:72253400-72274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72258200-72274000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72260600-72286200	Weak transcription	Aorta	Aorta
5	chr9:72262400-72274200	Weak transcription	Brain Angular Gyrus	brain
6	chr9:72262600-72285400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:72262800-72275600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:72264600-72275200	Weak transcription	Fetal Stomach	stomach
9	chr9:72265600-72272800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:72266000-72273800	Weak transcription	Fetal Lung	lung
11	chr9:72269000-72272600	Weak transcription	Liver	Liver
12	chr9:72269000-72274000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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